miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26450 3' -56.4 NC_005357.1 + 6584 0.68 0.460541
Target:  5'- --cCGCCUCGGCCAgGGgGCuGCGGu- -3'
miRNA:   3'- gauGUGGAGCUGGUgCCgCG-CGUUcc -5'
26450 3' -56.4 NC_005357.1 + 5409 0.69 0.437883
Target:  5'- -aGCACCUucugCGuacgcuCCACGGCGCggauggcggcguggGCGAGGu -3'
miRNA:   3'- gaUGUGGA----GCu-----GGUGCCGCG--------------CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 13874 0.71 0.302115
Target:  5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3'
miRNA:   3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 8058 0.74 0.224309
Target:  5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3'
miRNA:   3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 29422 0.67 0.543682
Target:  5'- aCUGCGCUgcgCGGCCuguacgagaACGGCGgGCGGu- -3'
miRNA:   3'- -GAUGUGGa--GCUGG---------UGCCGCgCGUUcc -5'
26450 3' -56.4 NC_005357.1 + 9974 0.68 0.501356
Target:  5'- --cCACCUCGcAgUAgGGgGCGUAGGGg -3'
miRNA:   3'- gauGUGGAGC-UgGUgCCgCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 6872 0.69 0.412121
Target:  5'- uCUugGCCUCGAacagaACGGgGaaaGCGAGGc -3'
miRNA:   3'- -GAugUGGAGCUgg---UGCCgCg--CGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 6706 0.79 0.097019
Target:  5'- -cACACCUUGuCCugGGCGCGCAu-- -3'
miRNA:   3'- gaUGUGGAGCuGGugCCGCGCGUucc -5'
26450 3' -56.4 NC_005357.1 + 2778 0.68 0.490996
Target:  5'- -gACACCUCGACguugCGCaGGUGCGCc--- -3'
miRNA:   3'- gaUGUGGAGCUG----GUG-CCGCGCGuucc -5'
26450 3' -56.4 NC_005357.1 + 20307 0.8 0.079397
Target:  5'- --cCugUUCGACCGCGGCGCGCu-GGa -3'
miRNA:   3'- gauGugGAGCUGGUGCCGCGCGuuCC- -5'
26450 3' -56.4 NC_005357.1 + 14605 0.69 0.421553
Target:  5'- -gGCGCC---ACCGCGggcagcGCGCGCGAGGa -3'
miRNA:   3'- gaUGUGGagcUGGUGC------CGCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 13344 0.68 0.460541
Target:  5'- -cGgGCCU-GACCuCGGCGCcCGAGGa -3'
miRNA:   3'- gaUgUGGAgCUGGuGCCGCGcGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 14999 0.7 0.349898
Target:  5'- cCUGCgGCCgcCGGgCGCGGUGCGCcAGGc -3'
miRNA:   3'- -GAUG-UGGa-GCUgGUGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 26972 0.71 0.317464
Target:  5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3'
miRNA:   3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5'
26450 3' -56.4 NC_005357.1 + 41062 0.73 0.240125
Target:  5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3'
miRNA:   3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5'
26450 3' -56.4 NC_005357.1 + 34350 0.74 0.224309
Target:  5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3'
miRNA:   3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5'
26450 3' -56.4 NC_005357.1 + 28745 0.67 0.565288
Target:  5'- -gACGCCgaCGACauccuCACGGUGCGCGgucauaucaccaAGGa -3'
miRNA:   3'- gaUGUGGa-GCUG-----GUGCCGCGCGU------------UCC- -5'
26450 3' -56.4 NC_005357.1 + 27487 0.67 0.554454
Target:  5'- -aGCAUCgcCGAgUugGGCGCGCAGucGGc -3'
miRNA:   3'- gaUGUGGa-GCUgGugCCGCGCGUU--CC- -5'
26450 3' -56.4 NC_005357.1 + 22313 0.67 0.532979
Target:  5'- -gGCA-UUCGACgACGGUGUGCuGGGc -3'
miRNA:   3'- gaUGUgGAGCUGgUGCCGCGCGuUCC- -5'
26450 3' -56.4 NC_005357.1 + 14147 0.67 0.507617
Target:  5'- uCUGCGCCgugucccagcgcgCGGUCAUGGUGCGCAAcauGGu -3'
miRNA:   3'- -GAUGUGGa------------GCUGGUGCCGCGCGUU---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.