Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26450 | 3' | -56.4 | NC_005357.1 | + | 38261 | 1.1 | 0.000552 |
Target: 5'- gCUACACCUCGACCACGGCGCGCAAGGu -3' miRNA: 3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 6872 | 0.69 | 0.412121 |
Target: 5'- uCUugGCCUCGAacagaACGGgGaaaGCGAGGc -3' miRNA: 3'- -GAugUGGAGCUgg---UGCCgCg--CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 5409 | 0.69 | 0.437883 |
Target: 5'- -aGCACCUucugCGuacgcuCCACGGCGCggauggcggcguggGCGAGGu -3' miRNA: 3'- gaUGUGGA----GCu-----GGUGCCGCG--------------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 626 | 0.66 | 0.624519 |
Target: 5'- ---gGCCUCaGCCuCGGCGCgggugaacgggucagGCGGGGg -3' miRNA: 3'- gaugUGGAGcUGGuGCCGCG---------------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 34350 | 0.74 | 0.224309 |
Target: 5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3' miRNA: 3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 28043 | 0.73 | 0.232103 |
Target: 5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3' miRNA: 3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 41062 | 0.73 | 0.240125 |
Target: 5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3' miRNA: 3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 4603 | 0.72 | 0.294658 |
Target: 5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3' miRNA: 3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 26972 | 0.71 | 0.317464 |
Target: 5'- -gGCAgCUUCGGCCAagGGCGCGuCAAGa -3' miRNA: 3'- gaUGU-GGAGCUGGUg-CCGCGC-GUUCc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 18893 | 0.7 | 0.393653 |
Target: 5'- -gAgGCCaUCGACCGCGuGCGcCGCcuGGa -3' miRNA: 3'- gaUgUGG-AGCUGGUGC-CGC-GCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 30407 | 0.71 | 0.341573 |
Target: 5'- -aAgACCUCGccgGCCACGGCcGCGCugcuGGc -3' miRNA: 3'- gaUgUGGAGC---UGGUGCCG-CGCGuu--CC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 13874 | 0.71 | 0.302115 |
Target: 5'- -cGCGCCgcgaUGGCCgGCGGC-CGCAAGGu -3' miRNA: 3'- gaUGUGGa---GCUGG-UGCCGcGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 20307 | 0.8 | 0.079397 |
Target: 5'- --cCugUUCGACCGCGGCGCGCu-GGa -3' miRNA: 3'- gauGugGAGCUGGUGCCGCGCGuuCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 14999 | 0.7 | 0.349898 |
Target: 5'- cCUGCgGCCgcCGGgCGCGGUGCGCcAGGc -3' miRNA: 3'- -GAUG-UGGa-GCUgGUGCCGCGCGuUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 6706 | 0.79 | 0.097019 |
Target: 5'- -cACACCUUGuCCugGGCGCGCAu-- -3' miRNA: 3'- gaUGUGGAGCuGGugCCGCGCGUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 7232 | 0.72 | 0.294658 |
Target: 5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3' miRNA: 3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 29117 | 0.7 | 0.37573 |
Target: 5'- cCUACGCCgccuacaacgcCGGCCcCGGCGCGCu--- -3' miRNA: 3'- -GAUGUGGa----------GCUGGuGCCGCGCGuucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 14605 | 0.69 | 0.421553 |
Target: 5'- -gGCGCC---ACCGCGggcagcGCGCGCGAGGa -3' miRNA: 3'- gaUGUGGagcUGGUGC------CGCGCGUUCC- -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 8058 | 0.74 | 0.224309 |
Target: 5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3' miRNA: 3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5' |
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26450 | 3' | -56.4 | NC_005357.1 | + | 22487 | 0.73 | 0.233934 |
Target: 5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3' miRNA: 3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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