miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26451 3' -57.1 NC_005357.1 + 28894 0.66 0.587655
Target:  5'- gUCAGgcGGCCGACAGuUCGGCgCGgacggcaaacCGCUu -3'
miRNA:   3'- -AGUU--CCGGCUGUUcAGCCG-GCa---------GCGG- -5'
26451 3' -57.1 NC_005357.1 + 36067 0.66 0.587655
Target:  5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3'
miRNA:   3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4269 0.66 0.587655
Target:  5'- gUCAGcGCCGGCAuGGUgaUGGCCGU-GUCg -3'
miRNA:   3'- -AGUUcCGGCUGU-UCA--GCCGGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 16172 0.66 0.587655
Target:  5'- aCcAGGCCGGCGGGUgccCGuGCCuUCGgCg -3'
miRNA:   3'- aGuUCCGGCUGUUCA---GC-CGGcAGCgG- -5'
26451 3' -57.1 NC_005357.1 + 21537 0.66 0.576764
Target:  5'- aCGuuGCCGGC-AGUCGGuuCCGUgGUCg -3'
miRNA:   3'- aGUucCGGCUGuUCAGCC--GGCAgCGG- -5'
26451 3' -57.1 NC_005357.1 + 26897 0.66 0.576764
Target:  5'- -gGAGGCCGGCAccgugcauaUCGGCC--UGCCc -3'
miRNA:   3'- agUUCCGGCUGUuc-------AGCCGGcaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25005 0.66 0.565919
Target:  5'- -gGGGGCCGACGAcagCGG--GUUGCCg -3'
miRNA:   3'- agUUCCGGCUGUUca-GCCggCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25302 0.66 0.565919
Target:  5'- gUCGugcGGCCGGCccugccacCGGCgcuCGUCGCCg -3'
miRNA:   3'- -AGUu--CCGGCUGuuca----GCCG---GCAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 33610 0.66 0.565919
Target:  5'- aUCAAGGCCGACAccaAGUaccGCC-UCGaCg -3'
miRNA:   3'- -AGUUCCGGCUGU---UCAgc-CGGcAGCgG- -5'
26451 3' -57.1 NC_005357.1 + 22495 0.66 0.565919
Target:  5'- cCAcGGCCGACAAGgaguUCGGCgG-CGaCa -3'
miRNA:   3'- aGUuCCGGCUGUUC----AGCCGgCaGCgG- -5'
26451 3' -57.1 NC_005357.1 + 17994 0.66 0.565919
Target:  5'- cCGAGGCCgcgcgcggcaccGACAAaUCgGGCCGgcugCGCUu -3'
miRNA:   3'- aGUUCCGG------------CUGUUcAG-CCGGCa---GCGG- -5'
26451 3' -57.1 NC_005357.1 + 32557 0.66 0.565919
Target:  5'- ---uGGCCGAgAAGcagCGcGCCGgUGCCa -3'
miRNA:   3'- aguuCCGGCUgUUCa--GC-CGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 3007 0.66 0.565919
Target:  5'- -gAAGGCgCGGCGGGUCauaGCUGcUCGUCc -3'
miRNA:   3'- agUUCCG-GCUGUUCAGc--CGGC-AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 18368 0.66 0.544396
Target:  5'- ----uGCCGGCGgcgaGGUUGGCC-UUGCCg -3'
miRNA:   3'- aguucCGGCUGU----UCAGCCGGcAGCGG- -5'
26451 3' -57.1 NC_005357.1 + 23178 0.66 0.544396
Target:  5'- aUCGAcGCCGAgAAGUUcaugGGCCuGaCGCCg -3'
miRNA:   3'- -AGUUcCGGCUgUUCAG----CCGG-CaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 5095 0.66 0.533733
Target:  5'- aCAGgcGGCCGGCccagcguccGGUgCGGCUGgCGCCg -3'
miRNA:   3'- aGUU--CCGGCUGu--------UCA-GCCGGCaGCGG- -5'
26451 3' -57.1 NC_005357.1 + 25335 0.67 0.523146
Target:  5'- cCAAGGcCCGGcCGAGaacCGcGCCGgcuUCGCCu -3'
miRNA:   3'- aGUUCC-GGCU-GUUCa--GC-CGGC---AGCGG- -5'
26451 3' -57.1 NC_005357.1 + 4557 0.67 0.523146
Target:  5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3'
miRNA:   3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 10315 0.67 0.523146
Target:  5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3'
miRNA:   3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5'
26451 3' -57.1 NC_005357.1 + 1033 0.67 0.523146
Target:  5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3'
miRNA:   3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.