Results 41 - 60 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 22295 | 0.7 | 0.831737 |
Target: 5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3' miRNA: 3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 17005 | 0.7 | 0.822948 |
Target: 5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3' miRNA: 3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 13578 | 0.7 | 0.851464 |
Target: 5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3' miRNA: 3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 8448 | 0.7 | 0.860451 |
Target: 5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3' miRNA: 3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 17699 | 0.7 | 0.84221 |
Target: 5'- gGCcGCGCAGGCGcgGUgGAaGCGGCCc -3' miRNA: 3'- -UGuUGCGUCUGUugUAgUUaCGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 16274 | 0.7 | 0.860451 |
Target: 5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3' miRNA: 3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 28139 | 0.7 | 0.822948 |
Target: 5'- aACGACGUGGGCcGCAUCGccgacagcaugGUGCagcaGGCCa -3' miRNA: 3'- -UGUUGCGUCUGuUGUAGU-----------UACG----CUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 23515 | 0.69 | 0.88572 |
Target: 5'- cCAGCGCGGGCGccgaccuCAUCGAccUGaUGACCc -3' miRNA: 3'- uGUUGCGUCUGUu------GUAGUU--AC-GCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 5749 | 0.69 | 0.88572 |
Target: 5'- cCAGCGCgccGGGCAGCG--AGUGCG-CCa -3' miRNA: 3'- uGUUGCG---UCUGUUGUagUUACGCuGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 37074 | 0.69 | 0.893551 |
Target: 5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3' miRNA: 3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 25270 | 0.69 | 0.88492 |
Target: 5'- -gGGCGCAucGACGACGUgaaguacCAAaGCGGCCu -3' miRNA: 3'- ugUUGCGU--CUGUUGUA-------GUUaCGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 1105 | 0.69 | 0.869162 |
Target: 5'- gGCGGCgGUAGGCGGCAaaggcuugccgUCGAUcaugagcaGCGGCCg -3' miRNA: 3'- -UGUUG-CGUCUGUUGU-----------AGUUA--------CGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 28744 | 0.69 | 0.88572 |
Target: 5'- -gGACGCcGACGACAUCcucacGGUGCGcggucauaucACCa -3' miRNA: 3'- ugUUGCGuCUGUUGUAG-----UUACGC----------UGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 19046 | 0.69 | 0.88572 |
Target: 5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3' miRNA: 3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 3564 | 0.69 | 0.88572 |
Target: 5'- cGCAGCaGCGGGCugggcguACAcCGAUccGCGGCCg -3' miRNA: 3'- -UGUUG-CGUCUGu------UGUaGUUA--CGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 4452 | 0.69 | 0.869162 |
Target: 5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3' miRNA: 3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 9513 | 0.69 | 0.877587 |
Target: 5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3' miRNA: 3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 2375 | 0.69 | 0.877587 |
Target: 5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3' miRNA: 3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 13390 | 0.69 | 0.877587 |
Target: 5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3' miRNA: 3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 35175 | 0.69 | 0.877587 |
Target: 5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3' miRNA: 3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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