Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26457 | 5' | -60.5 | NC_005357.1 | + | 26619 | 0.67 | 0.305896 |
Target: 5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3' miRNA: 3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 38550 | 0.66 | 0.345056 |
Target: 5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3' miRNA: 3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 18524 | 0.68 | 0.291214 |
Target: 5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3' miRNA: 3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 7731 | 0.74 | 0.103136 |
Target: 5'- cGCACGcucGGCGGCCGGCuugcuGUUGGCGa -3' miRNA: 3'- cUGUGCca-CCGCCGGUCG-----CAACCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9194 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 9050 | 0.67 | 0.335338 |
Target: 5'- --aGCGGUGGCcgugccgcgauaGCCAGCGgUGGcCGUg -3' miRNA: 3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 41732 | 0.66 | 0.361698 |
Target: 5'- --gGCGGUaucuugGGCGGcCCGGCc--GGCGCc -3' miRNA: 3'- cugUGCCA------CCGCC-GGUCGcaaCCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 21101 | 0.66 | 0.387688 |
Target: 5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3' miRNA: 3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 18675 | 0.75 | 0.087149 |
Target: 5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3' miRNA: 3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 12292 | 0.8 | 0.039113 |
Target: 5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3' miRNA: 3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 38408 | 0.73 | 0.132357 |
Target: 5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3' miRNA: 3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 36896 | 0.74 | 0.106056 |
Target: 5'- cGACcuggGCGGaaccugGGCGGCCGGCGUgccuacgacuuUGGCaGCa -3' miRNA: 3'- -CUG----UGCCa-----CCGCCGGUCGCA-----------ACCG-CG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 212 | 0.71 | 0.173642 |
Target: 5'- cGACACGGcgaacUGGCGcaccUCGGCaUUGGCGCg -3' miRNA: 3'- -CUGUGCC-----ACCGCc---GGUCGcAACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 1710 | 0.67 | 0.328972 |
Target: 5'- -cCGUGGgccGGCGuGCCGGCGagGGCGUc -3' miRNA: 3'- cuGUGCCa--CCGC-CGGUCGCaaCCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 38881 | 0.67 | 0.328972 |
Target: 5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3' miRNA: 3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 17092 | 0.67 | 0.328972 |
Target: 5'- cGGCGCGGUucuCGGCCGgGCcUUGGgGCu -3' miRNA: 3'- -CUGUGCCAcc-GCCGGU-CGcAACCgCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 8663 | 0.67 | 0.321139 |
Target: 5'- cGCGCGGUcGGCauugcguGCCgcgcgcaccucGGCGUUGGUGUa -3' miRNA: 3'- cUGUGCCA-CCGc------CGG-----------UCGCAACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 27836 | 0.67 | 0.305896 |
Target: 5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3' miRNA: 3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 15539 | 0.69 | 0.220238 |
Target: 5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3' miRNA: 3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5' |
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26457 | 5' | -60.5 | NC_005357.1 | + | 21724 | 0.69 | 0.226028 |
Target: 5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3' miRNA: 3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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