miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 5' -60.5 NC_005357.1 + 36851 1.1 0.00018
Target:  5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3'
miRNA:   3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 10207 0.68 0.284082
Target:  5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3'
miRNA:   3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 26619 0.67 0.305896
Target:  5'- uGCGCGGUGGUGGCCgAGgGUaacgaGGaccgGCu -3'
miRNA:   3'- cUGUGCCACCGCCGG-UCgCAa----CCg---CG- -5'
26457 5' -60.5 NC_005357.1 + 21101 0.66 0.387688
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26457 5' -60.5 NC_005357.1 + 36896 0.74 0.106056
Target:  5'- cGACcuggGCGGaaccugGGCGGCCGGCGUgccuacgacuuUGGCaGCa -3'
miRNA:   3'- -CUG----UGCCa-----CCGCCGGUCGCA-----------ACCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 38408 0.73 0.132357
Target:  5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3'
miRNA:   3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5'
26457 5' -60.5 NC_005357.1 + 21287 0.71 0.173642
Target:  5'- gGGCGCGGacacGGCGGCCAaGCug-GGCaGCg -3'
miRNA:   3'- -CUGUGCCa---CCGCCGGU-CGcaaCCG-CG- -5'
26457 5' -60.5 NC_005357.1 + 8557 0.71 0.183172
Target:  5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3'
miRNA:   3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 16890 0.69 0.244174
Target:  5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3'
miRNA:   3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5'
26457 5' -60.5 NC_005357.1 + 17753 0.68 0.277088
Target:  5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3'
miRNA:   3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7422 0.69 0.250487
Target:  5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3'
miRNA:   3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5'
26457 5' -60.5 NC_005357.1 + 5085 0.7 0.214016
Target:  5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3'
miRNA:   3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 12292 0.8 0.039113
Target:  5'- cGACGCGGU-GCaGGCCGGCGgcguguucUGGCGCg -3'
miRNA:   3'- -CUGUGCCAcCG-CCGGUCGCa-------ACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 14972 0.68 0.256283
Target:  5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3'
miRNA:   3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 18675 0.75 0.087149
Target:  5'- cGGCcCGGUGGC-GCCGGCa-UGGCGCu -3'
miRNA:   3'- -CUGuGCCACCGcCGGUCGcaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 38836 0.7 0.214016
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26457 5' -60.5 NC_005357.1 + 31895 0.68 0.270233
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26457 5' -60.5 NC_005357.1 + 18524 0.68 0.291214
Target:  5'- cGGCAUGGaaGCcGCgGGCG-UGGCGCa -3'
miRNA:   3'- -CUGUGCCacCGcCGgUCGCaACCGCG- -5'
26457 5' -60.5 NC_005357.1 + 7731 0.74 0.103136
Target:  5'- cGCACGcucGGCGGCCGGCuugcuGUUGGCGa -3'
miRNA:   3'- cUGUGCca-CCGCCGGUCG-----CAACCGCg -5'
26457 5' -60.5 NC_005357.1 + 1754 0.71 0.160176
Target:  5'- --gGCGGUcauGGcCGGCCuGCGccUGGCGCg -3'
miRNA:   3'- cugUGCCA---CC-GCCGGuCGCa-ACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.