miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 26747 0.66 0.852056
Target:  5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3'
miRNA:   3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 17113 0.66 0.852056
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 31022 0.66 0.852056
Target:  5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3'
miRNA:   3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 32705 0.66 0.852056
Target:  5'- uGCUCGCCGcgugcaauCAGGCgauggagGGCUGAcGCCa -3'
miRNA:   3'- -UGAGCGGCu-------GUUUGaa-----UCGGCU-UGGc -5'
26458 3' -51.8 NC_005357.1 + 37820 0.66 0.843126
Target:  5'- --cCGCCGACAucauc-GCCGAgGCCGa -3'
miRNA:   3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5'
26458 3' -51.8 NC_005357.1 + 23759 0.66 0.843126
Target:  5'- --aUGCCGGCGccACcgGGCCGAugCGc -3'
miRNA:   3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5'
26458 3' -51.8 NC_005357.1 + 679 0.66 0.843126
Target:  5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3'
miRNA:   3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 26071 0.66 0.843126
Target:  5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3'
miRNA:   3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 11185 0.66 0.843126
Target:  5'- -gUCGcCCGGCucguAGCUgGGCCGcgcGCCGg -3'
miRNA:   3'- ugAGC-GGCUGu---UUGAaUCGGCu--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 18465 0.66 0.842219
Target:  5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3'
miRNA:   3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 11105 0.66 0.833955
Target:  5'- -gUCGCCG-CGAcCUgggauuccAGCCGGGCCa -3'
miRNA:   3'- ugAGCGGCuGUUuGAa-------UCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 27538 0.66 0.814935
Target:  5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3'
miRNA:   3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 24395 0.66 0.805108
Target:  5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3'
miRNA:   3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5'
26458 3' -51.8 NC_005357.1 + 33134 0.66 0.804114
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26458 3' -51.8 NC_005357.1 + 24769 0.66 0.804114
Target:  5'- aGCcCGCCGACGccaucaaGAUcgUGGCCGuacuGCCGc -3'
miRNA:   3'- -UGaGCGGCUGU-------UUGa-AUCGGCu---UGGC- -5'
26458 3' -51.8 NC_005357.1 + 16793 0.67 0.795083
Target:  5'- aACUCGCCGAgGugGACgcgcuGCUGGcgACCGc -3'
miRNA:   3'- -UGAGCGGCUgU--UUGaau--CGGCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 30411 0.67 0.795083
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26458 3' -51.8 NC_005357.1 + 18578 0.67 0.795083
Target:  5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3'
miRNA:   3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5'
26458 3' -51.8 NC_005357.1 + 37174 0.67 0.795083
Target:  5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3'
miRNA:   3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 8924 0.67 0.774494
Target:  5'- uCUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- uGAGCGGcUGUUugaAUCGGCuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.