Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2646 | 5' | -56.5 | NC_001491.2 | + | 5212 | 0.66 | 0.884332 |
Target: 5'- -aCCGGgucGGCCGCGucCCCACcGCCGgGUg -3' miRNA: 3'- gaGGCU---UUGGCGU--GGGUGuCGGUgUA- -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 139382 | 0.66 | 0.877221 |
Target: 5'- gUCCGugGUgGCAUCCACAGCCccuACAg -3' miRNA: 3'- gAGGCuuUGgCGUGGGUGUCGG---UGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 35296 | 0.66 | 0.846611 |
Target: 5'- -cCCGGGAgCGcCACCU-CAGCCGCGc -3' miRNA: 3'- gaGGCUUUgGC-GUGGGuGUCGGUGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 32424 | 0.67 | 0.830093 |
Target: 5'- gCUCCGGcuccAGCUucgGCGCCCGCucccAGCCGCc- -3' miRNA: 3'- -GAGGCU----UUGG---CGUGGGUG----UCGGUGua -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 39226 | 0.67 | 0.830093 |
Target: 5'- ---aGAGGCgGCGCCCGCAuccCCACAUa -3' miRNA: 3'- gaggCUUUGgCGUGGGUGUc--GGUGUA- -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 28178 | 0.67 | 0.830093 |
Target: 5'- aCUCCGAAacGCUGCucucCCCGCuGGCCuCGUc -3' miRNA: 3'- -GAGGCUU--UGGCGu---GGGUG-UCGGuGUA- -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 32058 | 0.67 | 0.830093 |
Target: 5'- -aCCGAGACCuGCccggggucCCCGCAGCC-CGa -3' miRNA: 3'- gaGGCUUUGG-CGu-------GGGUGUCGGuGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 39438 | 0.67 | 0.821556 |
Target: 5'- --gCGAAGCCGCggGCCC-CAGUCGCc- -3' miRNA: 3'- gagGCUUUGGCG--UGGGuGUCGGUGua -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 31586 | 0.67 | 0.812843 |
Target: 5'- -gCCGGAGCUaGCACgCCAUGGCCAg-- -3' miRNA: 3'- gaGGCUUUGG-CGUG-GGUGUCGGUgua -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 25752 | 0.67 | 0.812843 |
Target: 5'- ---aGggGCCagGCAgcCCCGCAGCCGCGc -3' miRNA: 3'- gaggCuuUGG--CGU--GGGUGUCGGUGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 84572 | 0.67 | 0.803964 |
Target: 5'- -aCCGuGACCGCgcaGCCCcaAGCCGCAc -3' miRNA: 3'- gaGGCuUUGGCG---UGGGugUCGGUGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 90316 | 0.67 | 0.803964 |
Target: 5'- gCUCCGGGgguaccacuauGCCGCuGCCCACAGUgCGgGUa -3' miRNA: 3'- -GAGGCUU-----------UGGCG-UGGGUGUCG-GUgUA- -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 31484 | 0.67 | 0.803964 |
Target: 5'- gUCCGAGcgcccGCCGCGgaacCCCGCcaccGGCCACc- -3' miRNA: 3'- gAGGCUU-----UGGCGU----GGGUG----UCGGUGua -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 32395 | 0.67 | 0.794927 |
Target: 5'- gCUCCGgcGCCGCuuCCCcCGGCgCACc- -3' miRNA: 3'- -GAGGCuuUGGCGu-GGGuGUCG-GUGua -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 132167 | 0.68 | 0.776413 |
Target: 5'- uCUCCGccuACCGCGCaggGCGGCUACGc -3' miRNA: 3'- -GAGGCuu-UGGCGUGgg-UGUCGGUGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 148436 | 0.68 | 0.766954 |
Target: 5'- -gCCGu--CCaCGCCCGCGGCCGCu- -3' miRNA: 3'- gaGGCuuuGGcGUGGGUGUCGGUGua -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 1554 | 0.68 | 0.766954 |
Target: 5'- gCUCCGAGggcuccacgGCCccaGCGCCgCGcCGGCCGCAg -3' miRNA: 3'- -GAGGCUU---------UGG---CGUGG-GU-GUCGGUGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 53556 | 0.68 | 0.757374 |
Target: 5'- -cUCG-AACgGCACCCGCAGCUAgCAUc -3' miRNA: 3'- gaGGCuUUGgCGUGGGUGUCGGU-GUA- -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 5258 | 0.68 | 0.747681 |
Target: 5'- -cCCGGcGACCGUucCCCGgGGCCACGg -3' miRNA: 3'- gaGGCU-UUGGCGu-GGGUgUCGGUGUa -5' |
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2646 | 5' | -56.5 | NC_001491.2 | + | 21689 | 0.69 | 0.737886 |
Target: 5'- uUCUGAguccAACCGCACCCACcaacagGGUCugGg -3' miRNA: 3'- gAGGCU----UUGGCGUGGGUG------UCGGugUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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