Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 3' | -55.3 | NC_005357.1 | + | 41284 | 0.66 | 0.657819 |
Target: 5'- cGacgGCGagCGCAaacGGCCGcugcucaugaUCGACGGCa -3' miRNA: 3'- aCga-CGCaaGCGU---CUGGU----------AGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 40538 | 0.71 | 0.332923 |
Target: 5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3' miRNA: 3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 39764 | 0.68 | 0.503552 |
Target: 5'- cUGCucgaUGCGUacCGCaAGACC-UCGcACGGCa -3' miRNA: 3'- -ACG----ACGCAa-GCG-UCUGGuAGC-UGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38933 | 0.66 | 0.623124 |
Target: 5'- cGCUGCGcUCugguacaGCGGGCCGUCGuucuCGuucGCg -3' miRNA: 3'- aCGACGCaAG-------CGUCUGGUAGCu---GC---CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38548 | 0.66 | 0.624243 |
Target: 5'- gGCgGCGacggcagCGCGG-CCuacagCGACGGCg -3' miRNA: 3'- aCGaCGCaa-----GCGUCuGGua---GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38319 | 0.69 | 0.43214 |
Target: 5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3' miRNA: 3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38229 | 0.67 | 0.601878 |
Target: 5'- cGCgacGUGcUCGCGGccaacaugcccGCCAUCGagGCGGCc -3' miRNA: 3'- aCGa--CGCaAGCGUC-----------UGGUAGC--UGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 37805 | 0.67 | 0.54659 |
Target: 5'- -cCUGCGgcagCGCGGGCCAacaUUGGCcuGGCu -3' miRNA: 3'- acGACGCaa--GCGUCUGGU---AGCUG--CCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 37021 | 0.66 | 0.624243 |
Target: 5'- gUGgaGCGUaCGCAGaagguGCUcgCGGCGcGCa -3' miRNA: 3'- -ACgaCGCAaGCGUC-----UGGuaGCUGC-CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 35941 | 0.67 | 0.557541 |
Target: 5'- aGC-GCGUgaaUGCGGGCCugcgCGGCGuGCa -3' miRNA: 3'- aCGaCGCAa--GCGUCUGGua--GCUGC-CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 35562 | 0.67 | 0.54659 |
Target: 5'- cGUUcUGUUCGaggccaAGACCGUCaACGGCg -3' miRNA: 3'- aCGAcGCAAGCg-----UCUGGUAGcUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 35314 | 0.66 | 0.646637 |
Target: 5'- cGCUGgGcaucaCGCAGuCCAUcgugcgCGugGGCg -3' miRNA: 3'- aCGACgCaa---GCGUCuGGUA------GCugCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 35112 | 1.12 | 0.000416 |
Target: 5'- cUGCUGCGUUCGCAGACCAUCGACGGCg -3' miRNA: 3'- -ACGACGCAAGCGUCUGGUAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 34204 | 0.66 | 0.646637 |
Target: 5'- cUGCUGaCGgcCGCcGACCAgcgCGACuacgaGGCc -3' miRNA: 3'- -ACGAC-GCaaGCGuCUGGUa--GCUG-----CCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 33962 | 0.81 | 0.075247 |
Target: 5'- gGCUGCGgcaUCGCAGGCCAccUCGACGcCg -3' miRNA: 3'- aCGACGCa--AGCGUCUGGU--AGCUGCcG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 33230 | 0.76 | 0.172325 |
Target: 5'- cGCcGCGccgccgaGCAGGCCAacgUCGACGGCg -3' miRNA: 3'- aCGaCGCaag----CGUCUGGU---AGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 32005 | 0.67 | 0.601878 |
Target: 5'- aGCUGUuggaaaugaaaaGUg-GCgAGGCCAUCGGCGcGCu -3' miRNA: 3'- aCGACG------------CAagCG-UCUGGUAGCUGC-CG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 30833 | 0.66 | 0.668976 |
Target: 5'- cUGCUGCccg-GCGG-CCAgcCGGCGGCc -3' miRNA: 3'- -ACGACGcaagCGUCuGGUa-GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 30580 | 0.69 | 0.43214 |
Target: 5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3' miRNA: 3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 30215 | 0.66 | 0.668976 |
Target: 5'- gUGCUGCG-UC-CcGACCAggGGCaGGCa -3' miRNA: 3'- -ACGACGCaAGcGuCUGGUagCUG-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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