miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 29869 0.66 0.437499
Target:  5'- gCGcAGCGCgaggcCGGCaagaaauucaccgaCgCCGAGGUCGAGCa -3'
miRNA:   3'- -GC-UCGUGau---GCCG--------------G-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 30091 0.78 0.070001
Target:  5'- cCGGGCGCcACGGCCCUugucccaggcgauGAGGCCGcGCc -3'
miRNA:   3'- -GCUCGUGaUGCCGGGG-------------CUCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 30828 0.72 0.171431
Target:  5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3'
miRNA:   3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 31237 0.68 0.334123
Target:  5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3'
miRNA:   3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 31278 0.7 0.254305
Target:  5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3'
miRNA:   3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5'
26461 5' -59.3 NC_005357.1 + 31856 0.66 0.430809
Target:  5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3'
miRNA:   3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5'
26461 5' -59.3 NC_005357.1 + 31912 0.71 0.212128
Target:  5'- cCGAGUGcCUGCGGCguUUCGAGGCCu-GCu -3'
miRNA:   3'- -GCUCGU-GAUGCCG--GGGCUCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 32354 0.69 0.26756
Target:  5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3'
miRNA:   3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 32701 0.68 0.332519
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26461 5' -59.3 NC_005357.1 + 33185 0.66 0.440384
Target:  5'- uGGGCGCccucggcACGGCCaCCGcuGGCUAucgcGGCa -3'
miRNA:   3'- gCUCGUGa------UGCCGG-GGCu-CCGGU----UCG- -5'
26461 5' -59.3 NC_005357.1 + 33337 0.66 0.430809
Target:  5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3'
miRNA:   3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 33784 0.66 0.440384
Target:  5'- gCGAGUACggcGCGGCCuggggcguuuCCGAagggcguaccGGCCAcGCc -3'
miRNA:   3'- -GCUCGUGa--UGCCGG----------GGCU----------CCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 33856 0.7 0.247247
Target:  5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3'
miRNA:   3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 34021 0.68 0.342225
Target:  5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3'
miRNA:   3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 34067 0.69 0.281367
Target:  5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 34445 0.7 0.254955
Target:  5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3'
miRNA:   3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5'
26461 5' -59.3 NC_005357.1 + 34734 0.76 0.098691
Target:  5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3'
miRNA:   3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 35146 1.12 0.000182
Target:  5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3'
miRNA:   3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 35271 0.66 0.420418
Target:  5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3'
miRNA:   3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 35372 0.7 0.229417
Target:  5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3'
miRNA:   3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.