Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26463 | 3' | -56.4 | NC_005357.1 | + | 34998 | 0.66 | 0.585451 |
Target: 5'- gUCGaG-GAAgUGUCCggGCGCCCGcuGCu -3' miRNA: 3'- aAGC-CgCUUgACAGG--UGCGGGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 24597 | 0.66 | 0.585451 |
Target: 5'- -gUGGCGGGCaucaaCC-CGCCCGAGGg -3' miRNA: 3'- aaGCCGCUUGaca--GGuGCGGGCUUCg -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 33394 | 0.66 | 0.578805 |
Target: 5'- gUUCGGCuuuacgucuggugacGAACUGgugcgCCGCcuGCUgGAAGCg -3' miRNA: 3'- -AAGCCG---------------CUUGACa----GGUG--CGGgCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 14817 | 0.66 | 0.574383 |
Target: 5'- cUCGGCGGcGCUG-CCuuCGCCC-AGGUc -3' miRNA: 3'- aAGCCGCU-UGACaGGu-GCGGGcUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 34415 | 0.66 | 0.574383 |
Target: 5'- -cCGGCGaAGCUGgcgCCaagggcACGUCCGAcGCc -3' miRNA: 3'- aaGCCGC-UUGACa--GG------UGCGGGCUuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 39172 | 0.66 | 0.574383 |
Target: 5'- -cUGGCGcggaAGCUGaaUCC-CGCCgGggGCu -3' miRNA: 3'- aaGCCGC----UUGAC--AGGuGCGGgCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 27417 | 0.66 | 0.563365 |
Target: 5'- gUCGcGCGc-CUGgcgcaCCGCGCCCGGcGGCc -3' miRNA: 3'- aAGC-CGCuuGACa----GGUGCGGGCU-UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 32127 | 0.66 | 0.563365 |
Target: 5'- -cUGGCGAAgUGg-CAC-CCCGAGGUg -3' miRNA: 3'- aaGCCGCUUgACagGUGcGGGCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 26053 | 0.66 | 0.552403 |
Target: 5'- -gCGGCGGGCgcgcUCCAUGCgcucggcgaacUCGggGCg -3' miRNA: 3'- aaGCCGCUUGac--AGGUGCG-----------GGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 804 | 0.66 | 0.552403 |
Target: 5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3' miRNA: 3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 5609 | 0.66 | 0.552403 |
Target: 5'- cUCGGCGGGgUGcguUUCGCGCgUGgcGCg -3' miRNA: 3'- aAGCCGCUUgAC---AGGUGCGgGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 7395 | 0.66 | 0.552403 |
Target: 5'- -gCGGCGAcCU-UCCACcaGCuuGAAGCc -3' miRNA: 3'- aaGCCGCUuGAcAGGUG--CGggCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 26771 | 0.66 | 0.551311 |
Target: 5'- cUCgGGCGAGCcGguaagCCAUaucagcgGCCUGGAGCa -3' miRNA: 3'- aAG-CCGCUUGaCa----GGUG-------CGGGCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 30391 | 0.66 | 0.549128 |
Target: 5'- gUCGGUGAuaACggcGUCCACGCUuucgcucggcauggCGAugAGCg -3' miRNA: 3'- aAGCCGCU--UGa--CAGGUGCGG--------------GCU--UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 32830 | 0.66 | 0.541507 |
Target: 5'- -aCGuCGAACU---CACGCCCGAGGUg -3' miRNA: 3'- aaGCcGCUUGAcagGUGCGGGCUUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 28379 | 0.66 | 0.540422 |
Target: 5'- cUUGGCGAGgUGUUCcaguucgACGCCgGcGGCg -3' miRNA: 3'- aAGCCGCUUgACAGG-------UGCGGgCuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 27847 | 0.67 | 0.535004 |
Target: 5'- -cCGGCcgcgccgcugcucaaGAACgUGUCCGCGCUCGccaucuuGGCg -3' miRNA: 3'- aaGCCG---------------CUUG-ACAGGUGCGGGCu------UCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 30612 | 0.67 | 0.530684 |
Target: 5'- aUCGGCGAuCUGUUCuuGCgaccagCCGgcGCg -3' miRNA: 3'- aAGCCGCUuGACAGGugCG------GGCuuCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 13647 | 0.67 | 0.530684 |
Target: 5'- -cCGGCGcGGCcGUCCAUGUCCuuGGUg -3' miRNA: 3'- aaGCCGC-UUGaCAGGUGCGGGcuUCG- -5' |
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26463 | 3' | -56.4 | NC_005357.1 | + | 14291 | 0.67 | 0.509283 |
Target: 5'- -cCGGCaAGCUG-CUGcCGCCCGAccaGGCg -3' miRNA: 3'- aaGCCGcUUGACaGGU-GCGGGCU---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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