miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26465 3' -56.9 NC_005357.1 + 19358 0.66 0.55434
Target:  5'- cGGCGGaAUUGC-CguugaGGUCGGcCAGGGCc -3'
miRNA:   3'- -UCGUC-UAGCGuGa----CCGGCUuGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 33219 0.66 0.55434
Target:  5'- cGCAGAaCGUGCgccgcgccGCCGAGCAGGcCa -3'
miRNA:   3'- uCGUCUaGCGUGac------CGGCUUGUCCcG- -5'
26465 3' -56.9 NC_005357.1 + 29267 0.66 0.55434
Target:  5'- cGCGGc-CGaCACUGGCCGAcauCGaGGCg -3'
miRNA:   3'- uCGUCuaGC-GUGACCGGCUu--GUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 34889 0.66 0.54344
Target:  5'- cGCGGAUCgaGCACgccGCCGAGCGcacGGUa -3'
miRNA:   3'- uCGUCUAG--CGUGac-CGGCUUGUc--CCG- -5'
26465 3' -56.9 NC_005357.1 + 8218 0.66 0.54344
Target:  5'- cGUAG-UCGCGCUGGUCGGcggccgucaGCAGcuuGCg -3'
miRNA:   3'- uCGUCuAGCGUGACCGGCU---------UGUCc--CG- -5'
26465 3' -56.9 NC_005357.1 + 17969 0.66 0.542354
Target:  5'- cAGCAGGUCGUcggcgucaaugucGCcgaGGCCGcGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCG-------------UGa--CCGGCuUGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 11956 0.66 0.542354
Target:  5'- cAGCAGGUgaCGCGaugaccgcgccccCUGGCaacuGAuuCAGGGCg -3'
miRNA:   3'- -UCGUCUA--GCGU-------------GACCGg---CUu-GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 33623 0.66 0.53261
Target:  5'- cAGCAGAUCgGUACUGaCCG-GCGcGGCc -3'
miRNA:   3'- -UCGUCUAG-CGUGACcGGCuUGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 34122 0.66 0.52186
Target:  5'- gAGCAGcgCGCaccGCUGGCUGcacugccccGGCAGcguGGCc -3'
miRNA:   3'- -UCGUCuaGCG---UGACCGGC---------UUGUC---CCG- -5'
26465 3' -56.9 NC_005357.1 + 37809 0.66 0.50062
Target:  5'- cGGCAGcgCGgGCcaacauuggccUGGCUGAcCuGGGCg -3'
miRNA:   3'- -UCGUCuaGCgUG-----------ACCGGCUuGuCCCG- -5'
26465 3' -56.9 NC_005357.1 + 14321 0.66 0.50062
Target:  5'- --uGGcgCGCGCcuUGGCUGAACugccGGGCc -3'
miRNA:   3'- ucgUCuaGCGUG--ACCGGCUUGu---CCCG- -5'
26465 3' -56.9 NC_005357.1 + 23380 0.66 0.50062
Target:  5'- cGCuGAUCGaCGCcgccggcGGCCGcuacCAGGGCu -3'
miRNA:   3'- uCGuCUAGC-GUGa------CCGGCuu--GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 32915 0.67 0.490143
Target:  5'- cAGCAuGAugccacuguUCGCAC-GGCgGAACAGGcugGCa -3'
miRNA:   3'- -UCGU-CU---------AGCGUGaCCGgCUUGUCC---CG- -5'
26465 3' -56.9 NC_005357.1 + 16255 0.67 0.490143
Target:  5'- uGGCGGAUgGCGUUGGCCucGCGcGcGGCc -3'
miRNA:   3'- -UCGUCUAgCGUGACCGGcuUGU-C-CCG- -5'
26465 3' -56.9 NC_005357.1 + 26054 0.67 0.490143
Target:  5'- cGGCGGG-CGCGCUccaugcgcucGG-CGAACucGGGGCg -3'
miRNA:   3'- -UCGUCUaGCGUGA----------CCgGCUUG--UCCCG- -5'
26465 3' -56.9 NC_005357.1 + 22417 0.67 0.47977
Target:  5'- uGCAGG-CGCGCcauGCCGAGCAaguuGGCg -3'
miRNA:   3'- uCGUCUaGCGUGac-CGGCUUGUc---CCG- -5'
26465 3' -56.9 NC_005357.1 + 42038 0.67 0.47977
Target:  5'- -aCAGucgCGCGCUGGCCGcgcucaaucGGCAGGccaaGCa -3'
miRNA:   3'- ucGUCua-GCGUGACCGGC---------UUGUCC----CG- -5'
26465 3' -56.9 NC_005357.1 + 32845 0.67 0.47977
Target:  5'- cGGCu--UCGC-CUGGCCGcaGACGGucGGCg -3'
miRNA:   3'- -UCGucuAGCGuGACCGGC--UUGUC--CCG- -5'
26465 3' -56.9 NC_005357.1 + 31445 0.67 0.469505
Target:  5'- uGCA-AUCcgGC-CUGGCCGAACAGguGGCc -3'
miRNA:   3'- uCGUcUAG--CGuGACCGGCUUGUC--CCG- -5'
26465 3' -56.9 NC_005357.1 + 31559 0.67 0.469505
Target:  5'- cGCGcAUCGCGCcGaCCGAagccacGCAGGGCc -3'
miRNA:   3'- uCGUcUAGCGUGaCcGGCU------UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.