Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26465 | 3' | -56.9 | NC_005357.1 | + | 19358 | 0.66 | 0.55434 |
Target: 5'- cGGCGGaAUUGC-CguugaGGUCGGcCAGGGCc -3' miRNA: 3'- -UCGUC-UAGCGuGa----CCGGCUuGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 33219 | 0.66 | 0.55434 |
Target: 5'- cGCAGAaCGUGCgccgcgccGCCGAGCAGGcCa -3' miRNA: 3'- uCGUCUaGCGUGac------CGGCUUGUCCcG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 29267 | 0.66 | 0.55434 |
Target: 5'- cGCGGc-CGaCACUGGCCGAcauCGaGGCg -3' miRNA: 3'- uCGUCuaGC-GUGACCGGCUu--GUcCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8218 | 0.66 | 0.54344 |
Target: 5'- cGUAG-UCGCGCUGGUCGGcggccgucaGCAGcuuGCg -3' miRNA: 3'- uCGUCuAGCGUGACCGGCU---------UGUCc--CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 34889 | 0.66 | 0.54344 |
Target: 5'- cGCGGAUCgaGCACgccGCCGAGCGcacGGUa -3' miRNA: 3'- uCGUCUAG--CGUGac-CGGCUUGUc--CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 17969 | 0.66 | 0.542354 |
Target: 5'- cAGCAGGUCGUcggcgucaaugucGCcgaGGCCGcGCGcGGCa -3' miRNA: 3'- -UCGUCUAGCG-------------UGa--CCGGCuUGUcCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 11956 | 0.66 | 0.542354 |
Target: 5'- cAGCAGGUgaCGCGaugaccgcgccccCUGGCaacuGAuuCAGGGCg -3' miRNA: 3'- -UCGUCUA--GCGU-------------GACCGg---CUu-GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 33623 | 0.66 | 0.53261 |
Target: 5'- cAGCAGAUCgGUACUGaCCG-GCGcGGCc -3' miRNA: 3'- -UCGUCUAG-CGUGACcGGCuUGUcCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 34122 | 0.66 | 0.52186 |
Target: 5'- gAGCAGcgCGCaccGCUGGCUGcacugccccGGCAGcguGGCc -3' miRNA: 3'- -UCGUCuaGCG---UGACCGGC---------UUGUC---CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 37809 | 0.66 | 0.50062 |
Target: 5'- cGGCAGcgCGgGCcaacauuggccUGGCUGAcCuGGGCg -3' miRNA: 3'- -UCGUCuaGCgUG-----------ACCGGCUuGuCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 23380 | 0.66 | 0.50062 |
Target: 5'- cGCuGAUCGaCGCcgccggcGGCCGcuacCAGGGCu -3' miRNA: 3'- uCGuCUAGC-GUGa------CCGGCuu--GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 14321 | 0.66 | 0.50062 |
Target: 5'- --uGGcgCGCGCcuUGGCUGAACugccGGGCc -3' miRNA: 3'- ucgUCuaGCGUG--ACCGGCUUGu---CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 32915 | 0.67 | 0.490143 |
Target: 5'- cAGCAuGAugccacuguUCGCAC-GGCgGAACAGGcugGCa -3' miRNA: 3'- -UCGU-CU---------AGCGUGaCCGgCUUGUCC---CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 16255 | 0.67 | 0.490143 |
Target: 5'- uGGCGGAUgGCGUUGGCCucGCGcGcGGCc -3' miRNA: 3'- -UCGUCUAgCGUGACCGGcuUGU-C-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 26054 | 0.67 | 0.490143 |
Target: 5'- cGGCGGG-CGCGCUccaugcgcucGG-CGAACucGGGGCg -3' miRNA: 3'- -UCGUCUaGCGUGA----------CCgGCUUG--UCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 22417 | 0.67 | 0.47977 |
Target: 5'- uGCAGG-CGCGCcauGCCGAGCAaguuGGCg -3' miRNA: 3'- uCGUCUaGCGUGac-CGGCUUGUc---CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 42038 | 0.67 | 0.47977 |
Target: 5'- -aCAGucgCGCGCUGGCCGcgcucaaucGGCAGGccaaGCa -3' miRNA: 3'- ucGUCua-GCGUGACCGGC---------UUGUCC----CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 32845 | 0.67 | 0.47977 |
Target: 5'- cGGCu--UCGC-CUGGCCGcaGACGGucGGCg -3' miRNA: 3'- -UCGucuAGCGuGACCGGC--UUGUC--CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 31445 | 0.67 | 0.469505 |
Target: 5'- uGCA-AUCcgGC-CUGGCCGAACAGguGGCc -3' miRNA: 3'- uCGUcUAG--CGuGACCGGCUUGUC--CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 31559 | 0.67 | 0.469505 |
Target: 5'- cGCGcAUCGCGCcGaCCGAagccacGCAGGGCc -3' miRNA: 3'- uCGUcUAGCGUGaCcGGCU------UGUCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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