Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26465 | 3' | -56.9 | NC_005357.1 | + | 1088 | 0.7 | 0.315033 |
Target: 5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3' miRNA: 3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 1482 | 0.74 | 0.16691 |
Target: 5'- uGGCAGGccgggguaUCGCaguGCUGGUCGGACAuGGCg -3' miRNA: 3'- -UCGUCU--------AGCG---UGACCGGCUUGUcCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 1867 | 0.78 | 0.094445 |
Target: 5'- uGCAGGUUcagcccguggccgGCGCUGGCCGggU-GGGCg -3' miRNA: 3'- uCGUCUAG-------------CGUGACCGGCuuGuCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 1937 | 0.71 | 0.292097 |
Target: 5'- cGCGGAUCGUcugcggguuCUGGUCGAGCGcGcGGCc -3' miRNA: 3'- uCGUCUAGCGu--------GACCGGCUUGU-C-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 4427 | 0.68 | 0.410444 |
Target: 5'- cGUAGGUCGUACccGGCCGcAACAccgccaGGCg -3' miRNA: 3'- uCGUCUAGCGUGa-CCGGC-UUGUc-----CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 5234 | 0.72 | 0.237358 |
Target: 5'- cAGCAGuUCGCGCaguucGGCCGGcagguCGGGGUc -3' miRNA: 3'- -UCGUCuAGCGUGa----CCGGCUu----GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 5810 | 0.68 | 0.439409 |
Target: 5'- gGGUAGAagcCGCcCUGGuuGGuCAGGGUu -3' miRNA: 3'- -UCGUCUa--GCGuGACCggCUuGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 6264 | 0.7 | 0.30724 |
Target: 5'- uGCGGuugaucugCGCGCUgggcaGGCCGAACAGGucGCc -3' miRNA: 3'- uCGUCua------GCGUGA-----CCGGCUUGUCC--CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 7611 | 0.7 | 0.299595 |
Target: 5'- cAGCAcguGGUCGCGCaGcGCCGGACAcGuGGCc -3' miRNA: 3'- -UCGU---CUAGCGUGaC-CGGCUUGU-C-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8218 | 0.66 | 0.54344 |
Target: 5'- cGUAG-UCGCGCUGGUCGGcggccgucaGCAGcuuGCg -3' miRNA: 3'- uCGUCuAGCGUGACCGGCU---------UGUCc--CG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8386 | 0.67 | 0.459354 |
Target: 5'- cGGCc--UCGCGCUGGCugcguagccaguCGGcCAGGGCc -3' miRNA: 3'- -UCGucuAGCGUGACCG------------GCUuGUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8612 | 0.72 | 0.231154 |
Target: 5'- aAGCuGGUUGCGCUucucGGCCGcuGCGGuGGCg -3' miRNA: 3'- -UCGuCUAGCGUGA----CCGGCu-UGUC-CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 8714 | 0.68 | 0.439409 |
Target: 5'- gGGuCGGAugUCGCGCaccuUGaGCCGGGacacCAGGGCg -3' miRNA: 3'- -UC-GUCU--AGCGUG----AC-CGGCUU----GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9401 | 0.68 | 0.410444 |
Target: 5'- uGCAuGUCGCGCaGGCCGc---GGGCu -3' miRNA: 3'- uCGUcUAGCGUGaCCGGCuuguCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9492 | 0.76 | 0.119145 |
Target: 5'- cAGCcguGGUCGCcCUGGCCGAACAGccagccgugcaGGCc -3' miRNA: 3'- -UCGu--CUAGCGuGACCGGCUUGUC-----------CCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 9881 | 0.68 | 0.406672 |
Target: 5'- gAGCGGcAUCGCcggcggcagcaucCUGGCCGGcaucaccagccuGCAcGGGCg -3' miRNA: 3'- -UCGUC-UAGCGu------------GACCGGCU------------UGU-CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 11510 | 0.7 | 0.299595 |
Target: 5'- gGGCAGcgCcuGCGCUGGCgugaggcccugCGAGC-GGGCa -3' miRNA: 3'- -UCGUCuaG--CGUGACCG-----------GCUUGuCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 11956 | 0.66 | 0.542354 |
Target: 5'- cAGCAGGUgaCGCGaugaccgcgccccCUGGCaacuGAuuCAGGGCg -3' miRNA: 3'- -UCGUCUA--GCGU-------------GACCGg---CUu-GUCCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 14321 | 0.66 | 0.50062 |
Target: 5'- --uGGcgCGCGCcuUGGCUGAACugccGGGCc -3' miRNA: 3'- ucgUCuaGCGUG--ACCGGCUUGu---CCCG- -5' |
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26465 | 3' | -56.9 | NC_005357.1 | + | 14647 | 0.74 | 0.179803 |
Target: 5'- cGCGGcgCGCGCUucguguacguguccGaGCCGGACgAGGGCa -3' miRNA: 3'- uCGUCuaGCGUGA--------------C-CGGCUUG-UCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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