miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 31696 1.05 0.00048
Target:  5'- cUUGGCGAGCAGCAAGGCGACGACGCAu -3'
miRNA:   3'- -AACCGCUCGUCGUUCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 3799 0.67 0.344448
Target:  5'- -cGGuCGGGCAGCAugaccAGGCGGuCGgggGCGCc -3'
miRNA:   3'- aaCC-GCUCGUCGU-----UCCGCU-GC---UGCGu -5'
26467 3' -58.5 NC_005357.1 + 29525 0.67 0.360703
Target:  5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3'
miRNA:   3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 24998 0.66 0.435771
Target:  5'- cUGGCgGGGCcacuGCucaAGGGCGACGugGg- -3'
miRNA:   3'- aACCG-CUCGu---CG---UUCCGCUGCugCgu -5'
26467 3' -58.5 NC_005357.1 + 38550 0.71 0.20484
Target:  5'- -cGGCGAcgGCAGCGcGGCcuacagcGACGGCGCc -3'
miRNA:   3'- aaCCGCU--CGUCGUuCCG-------CUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 17351 0.71 0.211013
Target:  5'- -gGGCGcGCuGCGcuGGGUGGCGAUGCu -3'
miRNA:   3'- aaCCGCuCGuCGU--UCCGCUGCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 10081 0.7 0.24112
Target:  5'- -cGGCGAccGCAGCGaccuGGGCGGCgguugucggGACGCc -3'
miRNA:   3'- aaCCGCU--CGUCGU----UCCGCUG---------CUGCGu -5'
26467 3' -58.5 NC_005357.1 + 36888 0.69 0.254132
Target:  5'- gUGGCGGGCgaccugGGCGgaaccuGGGCGGcCGGCGUg -3'
miRNA:   3'- aACCGCUCG------UCGU------UCCGCU-GCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 6181 0.69 0.281157
Target:  5'- -aGGcCGGucuugccGCAGCGuuugcAGGUGACGGCGCGc -3'
miRNA:   3'- aaCC-GCU-------CGUCGU-----UCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 22694 0.68 0.336107
Target:  5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3'
miRNA:   3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 34390 0.68 0.304228
Target:  5'- aUGGaCG-GCGGCAAGGaCGGCGGCc-- -3'
miRNA:   3'- aACC-GCuCGUCGUUCC-GCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 14566 0.69 0.263579
Target:  5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3'
miRNA:   3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 8564 0.78 0.056861
Target:  5'- aUGGCGGGCAGCGacAGGCGcgacACGACGg- -3'
miRNA:   3'- aACCGCUCGUCGU--UCCGC----UGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 8519 0.68 0.311975
Target:  5'- -gGGUGGGCcguGGCGuAGGCGAUGAaaCGCu -3'
miRNA:   3'- aaCCGCUCG---UCGU-UCCGCUGCU--GCGu -5'
26467 3' -58.5 NC_005357.1 + 5611 0.73 0.151736
Target:  5'- -cGGCGGGguGCGuuucgcgcguGGCG-CGGCGCAg -3'
miRNA:   3'- aaCCGCUCguCGUu---------CCGCuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 14613 0.69 0.254132
Target:  5'- --cGCGGGCAGCGcGcGCGAgGACGUg -3'
miRNA:   3'- aacCGCUCGUCGUuC-CGCUgCUGCGu -5'
26467 3' -58.5 NC_005357.1 + 26243 0.68 0.327914
Target:  5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3'
miRNA:   3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 4994 0.67 0.344448
Target:  5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3'
miRNA:   3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 21869 0.72 0.179212
Target:  5'- gUGGCucauGAGCAGCAAgcGGgGGCGcCGCAu -3'
miRNA:   3'- aACCG----CUCGUCGUU--CCgCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 4049 0.7 0.222648
Target:  5'- -cGGCGAGCGGC-AGGCcaGCGGCcCAg -3'
miRNA:   3'- aaCCGCUCGUCGuUCCGc-UGCUGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.