miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26467 3' -58.5 NC_005357.1 + 29525 0.67 0.360703
Target:  5'- -cGGcCGAGC-GCAucgccaaAGGCGACGACa-- -3'
miRNA:   3'- aaCC-GCUCGuCGU-------UCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 8904 0.67 0.358967
Target:  5'- aUGGCGcuaucGGCGGCGcgcucgauggcuucGGGCGugGACa-- -3'
miRNA:   3'- aACCGC-----UCGUCGU--------------UCCGCugCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 15340 0.67 0.352937
Target:  5'- -cGGUGAGCcGUAGGGUucgGACGuGCGCu -3'
miRNA:   3'- aaCCGCUCGuCGUUCCG---CUGC-UGCGu -5'
26467 3' -58.5 NC_005357.1 + 2025 0.67 0.352082
Target:  5'- cUGGCGaAGUcGCGcAGGCGAuagaacaCGGCGCGc -3'
miRNA:   3'- aACCGC-UCGuCGU-UCCGCU-------GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 3799 0.67 0.344448
Target:  5'- -cGGuCGGGCAGCAugaccAGGCGGuCGgggGCGCc -3'
miRNA:   3'- aaCC-GCUCGUCGU-----UCCGCU-GC---UGCGu -5'
26467 3' -58.5 NC_005357.1 + 4994 0.67 0.344448
Target:  5'- gUUGGCGAaCAGC-AGGU--CGGCGCAg -3'
miRNA:   3'- -AACCGCUcGUCGuUCCGcuGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 22694 0.68 0.336107
Target:  5'- -cGGCaaccAGCccaAGCAGGGCGAUG-CGCGg -3'
miRNA:   3'- aaCCGc---UCG---UCGUUCCGCUGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 26243 0.68 0.327914
Target:  5'- aUGGCGcGUGGCGucGGUGAacucCGACGCGg -3'
miRNA:   3'- aACCGCuCGUCGUu-CCGCU----GCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 6508 0.68 0.32307
Target:  5'- gUUGGCGAGCAGUuucuuGGCGAguuuuucggggucguCGuCGCc -3'
miRNA:   3'- -AACCGCUCGUCGuu---CCGCU---------------GCuGCGu -5'
26467 3' -58.5 NC_005357.1 + 8519 0.68 0.311975
Target:  5'- -gGGUGGGCcguGGCGuAGGCGAUGAaaCGCu -3'
miRNA:   3'- aaCCGCUCG---UCGU-UCCGCUGCU--GCGu -5'
26467 3' -58.5 NC_005357.1 + 9319 0.68 0.311975
Target:  5'- cUGGCGGcgcacgucggcGCGGC-GGGCGGCGGCa-- -3'
miRNA:   3'- aACCGCU-----------CGUCGuUCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 34390 0.68 0.304228
Target:  5'- aUGGaCG-GCGGCAAGGaCGGCGGCc-- -3'
miRNA:   3'- aACC-GCuCGUCGUUCC-GCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 35963 0.68 0.304228
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26467 3' -58.5 NC_005357.1 + 17676 0.68 0.296631
Target:  5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3'
miRNA:   3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5'
26467 3' -58.5 NC_005357.1 + 15144 0.68 0.295879
Target:  5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3'
miRNA:   3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5'
26467 3' -58.5 NC_005357.1 + 23519 0.69 0.289181
Target:  5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3'
miRNA:   3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5'
26467 3' -58.5 NC_005357.1 + 4375 0.69 0.289181
Target:  5'- -aGGCGGaugcGCAGCcAGGCGcCGuCGCGc -3'
miRNA:   3'- aaCCGCU----CGUCGuUCCGCuGCuGCGU- -5'
26467 3' -58.5 NC_005357.1 + 6181 0.69 0.281157
Target:  5'- -aGGcCGGucuugccGCAGCGuuugcAGGUGACGGCGCGc -3'
miRNA:   3'- aaCC-GCU-------CGUCGU-----UCCGCUGCUGCGU- -5'
26467 3' -58.5 NC_005357.1 + 23578 0.69 0.274724
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5'
26467 3' -58.5 NC_005357.1 + 14566 0.69 0.263579
Target:  5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3'
miRNA:   3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.