Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26472 | 5' | -57.5 | NC_005357.1 | + | 7627 | 0.66 | 0.537953 |
Target: 5'- aGCGcCGGACACgUGGCCuuGGC-CUUGc -3' miRNA: 3'- -CGUaGCCUGUG-ACUGGggCUGcGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 24966 | 0.66 | 0.527268 |
Target: 5'- uGCAggcccuggCGuGGCAcCUGGCCUCGAUGCUg- -3' miRNA: 3'- -CGUa-------GC-CUGU-GACUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 20128 | 0.66 | 0.527268 |
Target: 5'- aGCAUCGuGCuGCccGACUUCGACGCCg- -3' miRNA: 3'- -CGUAGCcUG-UGa-CUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 33956 | 0.66 | 0.516663 |
Target: 5'- cGCGUCGGcugcgGCAUcGcaggccACCUCGACGCCg- -3' miRNA: 3'- -CGUAGCC-----UGUGaC------UGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 26252 | 0.66 | 0.516663 |
Target: 5'- gGCGUCGGugA---ACUCCGACGCg-- -3' miRNA: 3'- -CGUAGCCugUgacUGGGGCUGCGgau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 7433 | 0.66 | 0.506145 |
Target: 5'- gGCGccCGGACACUu-CCUCGACGCg-- -3' miRNA: 3'- -CGUa-GCCUGUGAcuGGGGCUGCGgau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 23175 | 0.66 | 0.506145 |
Target: 5'- aGCAUC-GACGCcgagaaguucaUGGgCCUGACGCCg- -3' miRNA: 3'- -CGUAGcCUGUG-----------ACUgGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 21808 | 0.66 | 0.49572 |
Target: 5'- cGCAggCcGACACcGACCUgCGACGCCg- -3' miRNA: 3'- -CGUa-GcCUGUGaCUGGG-GCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 18705 | 0.66 | 0.494683 |
Target: 5'- cGCGccacCGaGGCACUGGCCCgCGACcugggcgcuaccgGCCUGu -3' miRNA: 3'- -CGUa---GC-CUGUGACUGGG-GCUG-------------CGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 27435 | 0.66 | 0.485393 |
Target: 5'- cGCGcccggCGGcCGCaGGCCCUGGCGCUg- -3' miRNA: 3'- -CGUa----GCCuGUGaCUGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 28518 | 0.66 | 0.485393 |
Target: 5'- aCAUCGcccugaACUGgaacaACCCCGACGCCa- -3' miRNA: 3'- cGUAGCcug---UGAC-----UGGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 626 | 0.67 | 0.47517 |
Target: 5'- cGCcgUGGACAC-GGCgUCCGGCGUCg- -3' miRNA: 3'- -CGuaGCCUGUGaCUG-GGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 30154 | 0.67 | 0.47517 |
Target: 5'- cGCGUCGGACAUcagcGGCagUUGGCGCCa- -3' miRNA: 3'- -CGUAGCCUGUGa---CUGg-GGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 34833 | 0.67 | 0.465055 |
Target: 5'- gGCAgaCGGACA--GACCCUGAC-CCUAc -3' miRNA: 3'- -CGUa-GCCUGUgaCUGGGGCUGcGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 17353 | 0.67 | 0.455053 |
Target: 5'- gGCAUCGGACACcaucGCCUgCGACagguauGCCUGc -3' miRNA: 3'- -CGUAGCCUGUGac--UGGG-GCUG------CGGAU- -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 41785 | 0.67 | 0.445169 |
Target: 5'- aGCcUUGGGCACcGA-CUCGACGCCg- -3' miRNA: 3'- -CGuAGCCUGUGaCUgGGGCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 35892 | 0.68 | 0.406879 |
Target: 5'- gGCGauUCGGGCgACgacGACCCCGAaaaacuCGCCa- -3' miRNA: 3'- -CGU--AGCCUG-UGa--CUGGGGCU------GCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 236 | 0.68 | 0.397634 |
Target: 5'- gGCAUUGGcGCGCUGGguuuCCCCGGuggUGCCg- -3' miRNA: 3'- -CGUAGCC-UGUGACU----GGGGCU---GCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 32959 | 0.68 | 0.397634 |
Target: 5'- uGCGUCGauuacuGGCAa-GACCCgGACGCCa- -3' miRNA: 3'- -CGUAGC------CUGUgaCUGGGgCUGCGGau -5' |
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26472 | 5' | -57.5 | NC_005357.1 | + | 12827 | 0.69 | 0.353484 |
Target: 5'- gGCGcUGGACaACUGGCaaaCCGcGCGCCUGg -3' miRNA: 3'- -CGUaGCCUG-UGACUGg--GGC-UGCGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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