Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26473 | 3' | -59.2 | NC_005357.1 | + | 34740 | 0.66 | 0.474411 |
Target: 5'- gCCGGcCGCCGAGGUCaAGCccgacgACCUg -3' miRNA: 3'- -GGCU-GCGGCUCCAGcUCGucg---UGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 31674 | 0.66 | 0.464491 |
Target: 5'- gCGG-GCCGAaGUCGAGC-GCGCCc- -3' miRNA: 3'- gGCUgCGGCUcCAGCUCGuCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25099 | 0.66 | 0.464491 |
Target: 5'- cCCGGCGCCGuGGgauacAGCgGGUGCUUCu -3' miRNA: 3'- -GGCUGCGGCuCCagc--UCG-UCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 16066 | 0.66 | 0.464491 |
Target: 5'- aCGugGCCGccG-CGcGCGGCGCCg- -3' miRNA: 3'- gGCugCGGCucCaGCuCGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 25287 | 0.66 | 0.464491 |
Target: 5'- gUCGaAUGCCuuGAGGUCGuGCGGCcgGCCc- -3' miRNA: 3'- -GGC-UGCGG--CUCCAGCuCGUCG--UGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 27298 | 0.66 | 0.464491 |
Target: 5'- uCCGcCGCCagcauGGGGUCGGGCcugguaGGCAgCUa -3' miRNA: 3'- -GGCuGCGG-----CUCCAGCUCG------UCGUgGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 20862 | 0.66 | 0.464491 |
Target: 5'- -aGugGCCGAGcGgcaCGAGgaaaAGCugCUCa -3' miRNA: 3'- ggCugCGGCUC-Ca--GCUCg---UCGugGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34473 | 0.66 | 0.454681 |
Target: 5'- gCG-CGCCGAGGccaCGGGCAaGCugucggaaauCCUCg -3' miRNA: 3'- gGCuGCGGCUCCa--GCUCGU-CGu---------GGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 4563 | 0.66 | 0.454681 |
Target: 5'- gCCGAaguCGCCGAGG-CGcugcucGguGCGCCa- -3' miRNA: 3'- -GGCU---GCGGCUCCaGCu-----CguCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 32589 | 0.66 | 0.444984 |
Target: 5'- aUCGACGCCGAaacCGAGguGCAgCg- -3' miRNA: 3'- -GGCUGCGGCUccaGCUCguCGUgGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 20617 | 0.66 | 0.444984 |
Target: 5'- gCGGCGUCGcAGGUCGGuGuCGGCcuGCgCUCg -3' miRNA: 3'- gGCUGCGGC-UCCAGCU-C-GUCG--UG-GAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 30494 | 0.66 | 0.444984 |
Target: 5'- gCUGAaaguCGUCGAGGUUGAGCAcgagguggcGCAgCUUCu -3' miRNA: 3'- -GGCU----GCGGCUCCAGCUCGU---------CGU-GGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 31060 | 0.66 | 0.435404 |
Target: 5'- aCCGAggUGCCG-GG-CGAGCAGguCGCCa- -3' miRNA: 3'- -GGCU--GCGGCuCCaGCUCGUC--GUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 29790 | 0.66 | 0.435404 |
Target: 5'- cCCGACGCCaaAGGaCG-GCAGCAgCg- -3' miRNA: 3'- -GGCUGCGGc-UCCaGCuCGUCGUgGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34512 | 0.66 | 0.435404 |
Target: 5'- -gGACGCCGAGcGcaaCGAGCAGCuggcgAUCUa -3' miRNA: 3'- ggCUGCGGCUC-Ca--GCUCGUCG-----UGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 10069 | 0.66 | 0.435404 |
Target: 5'- uCCGAggcguCGUCGGGG-CGAGCcguGCcauCCUCg -3' miRNA: 3'- -GGCU-----GCGGCUCCaGCUCGu--CGu--GGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 12290 | 0.66 | 0.434452 |
Target: 5'- uCCGACGCgGugcAGGcCG-GCGGCguguucuggcgcgGCCUCa -3' miRNA: 3'- -GGCUGCGgC---UCCaGCuCGUCG-------------UGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 13902 | 0.66 | 0.429713 |
Target: 5'- aUGGCGUCGGGGUuguuccaguucagggCGAugucgcGCAGCGCCg- -3' miRNA: 3'- gGCUGCGGCUCCA---------------GCU------CGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 14841 | 0.66 | 0.425943 |
Target: 5'- gUCGAUGCCGuuGG-CGGcCAGCGCCg- -3' miRNA: 3'- -GGCUGCGGCu-CCaGCUcGUCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 19366 | 0.66 | 0.425943 |
Target: 5'- uUGcCGuuGAGGUCGGcCAGgGCCUUg -3' miRNA: 3'- gGCuGCggCUCCAGCUcGUCgUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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