Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26473 | 3' | -59.2 | NC_005357.1 | + | 41143 | 0.68 | 0.34663 |
Target: 5'- gCGGCGgUGuGGgCGGGCAuCACCUCg -3' miRNA: 3'- gGCUGCgGCuCCaGCUCGUcGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 39327 | 0.77 | 0.090215 |
Target: 5'- aUGACGCCGcaucAGGUCGAGaCAGCACaagugCUCa -3' miRNA: 3'- gGCUGCGGC----UCCAGCUC-GUCGUG-----GAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 37856 | 0.71 | 0.210168 |
Target: 5'- cCUGGCGCac----CGAGCAGCGCCUCg -3' miRNA: 3'- -GGCUGCGgcuccaGCUCGUCGUGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 37822 | 0.82 | 0.034085 |
Target: 5'- gCCGAcaucauCGCCGAGGcCGAGCAGUuCCUCg -3' miRNA: 3'- -GGCU------GCGGCUCCaGCUCGUCGuGGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 35193 | 0.69 | 0.314935 |
Target: 5'- gCCGAcauCGCCGAGGgUGAGCgcGGCGCa-- -3' miRNA: 3'- -GGCU---GCGGCUCCaGCUCG--UCGUGgag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 35155 | 0.69 | 0.314935 |
Target: 5'- aCGGCcCCGAGGcCaAGCAGCAgUUCa -3' miRNA: 3'- gGCUGcGGCUCCaGcUCGUCGUgGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 35077 | 0.81 | 0.039394 |
Target: 5'- aCGACGCCGAGGUCGAGgCcGCGCUc- -3' miRNA: 3'- gGCUGCGGCUCCAGCUC-GuCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34882 | 0.7 | 0.271586 |
Target: 5'- gUGGCGCCGcGGaUCGAGCA-CGCCg- -3' miRNA: 3'- gGCUGCGGCuCC-AGCUCGUcGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34794 | 0.73 | 0.1655 |
Target: 5'- gCCGGCGU--GGGUCGAGCcGCGCCc- -3' miRNA: 3'- -GGCUGCGgcUCCAGCUCGuCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34740 | 0.66 | 0.474411 |
Target: 5'- gCCGGcCGCCGAGGUCaAGCccgacgACCUg -3' miRNA: 3'- -GGCU-GCGGCUCCAGcUCGucg---UGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34512 | 0.66 | 0.435404 |
Target: 5'- -gGACGCCGAGcGcaaCGAGCAGCuggcgAUCUa -3' miRNA: 3'- ggCUGCGGCUC-Ca--GCUCGUCG-----UGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 34473 | 0.66 | 0.454681 |
Target: 5'- gCG-CGCCGAGGccaCGGGCAaGCugucggaaauCCUCg -3' miRNA: 3'- gGCuGCGGCUCCa--GCUCGU-CGu---------GGAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 33870 | 0.75 | 0.112824 |
Target: 5'- aCGACGCCcaggauGAGGUCGAGC-GCgGCCUg -3' miRNA: 3'- gGCUGCGG------CUCCAGCUCGuCG-UGGAg -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 33749 | 0.73 | 0.170007 |
Target: 5'- aCCaACGCCGAGGUgCGcGCGGCACg-- -3' miRNA: 3'- -GGcUGCGGCUCCA-GCuCGUCGUGgag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 32627 | 0.69 | 0.292634 |
Target: 5'- gCGACGCCGcGGUCGcuguccugucgaAGUucGGCGCCg- -3' miRNA: 3'- gGCUGCGGCuCCAGC------------UCG--UCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 32589 | 0.66 | 0.444984 |
Target: 5'- aUCGACGCCGAaacCGAGguGCAgCg- -3' miRNA: 3'- -GGCUGCGGCUccaGCUCguCGUgGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 32344 | 0.68 | 0.34663 |
Target: 5'- aCCGcCGCCcAGGUCGcuGCGGuCGCCg- -3' miRNA: 3'- -GGCuGCGGcUCCAGCu-CGUC-GUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 31913 | 0.67 | 0.380545 |
Target: 5'- gCGugGCCGGcGGUC-AGCAGUuCgUCa -3' miRNA: 3'- gGCugCGGCU-CCAGcUCGUCGuGgAG- -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 31674 | 0.66 | 0.464491 |
Target: 5'- gCGG-GCCGAaGUCGAGC-GCGCCc- -3' miRNA: 3'- gGCUgCGGCUcCAGCUCGuCGUGGag -5' |
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26473 | 3' | -59.2 | NC_005357.1 | + | 31628 | 0.71 | 0.204732 |
Target: 5'- gCCG-CGCCGAGG-CGcAGCAGUACaugCa -3' miRNA: 3'- -GGCuGCGGCUCCaGC-UCGUCGUGga-G- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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