miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26475 5' -56 NC_005357.1 + 41842 0.66 0.615589
Target:  5'- gCAGGCGGCCaucaaACUCAAGgAacuggaaaccaauucGCGCGu -3'
miRNA:   3'- -GUCUGCCGGcg---UGAGUUCgU---------------UGCGCu -5'
26475 5' -56 NC_005357.1 + 4353 0.66 0.599934
Target:  5'- gCAGAggaauCGGCCGgACggCAGGCGgauGCGCa- -3'
miRNA:   3'- -GUCU-----GCCGGCgUGa-GUUCGU---UGCGcu -5'
26475 5' -56 NC_005357.1 + 4039 0.66 0.599934
Target:  5'- aAGcCGGCCGCGg-CGAGCGGCaggccaGCGGc -3'
miRNA:   3'- gUCuGCCGGCGUgaGUUCGUUG------CGCU- -5'
26475 5' -56 NC_005357.1 + 8914 0.66 0.599934
Target:  5'- -cGGCGG-CGCGCUCGauGGCuucgGGCGUGGa -3'
miRNA:   3'- guCUGCCgGCGUGAGU--UCG----UUGCGCU- -5'
26475 5' -56 NC_005357.1 + 8833 0.66 0.599934
Target:  5'- uCGGGCcaGCCGCAacgCGGGCcAGCGCGu -3'
miRNA:   3'- -GUCUGc-CGGCGUga-GUUCG-UUGCGCu -5'
26475 5' -56 NC_005357.1 + 19975 0.66 0.59324
Target:  5'- uCGGGCaGGCCGCcgauguccgcguagaACUCGccaacuugcucGGCAugGCGc -3'
miRNA:   3'- -GUCUG-CCGGCG---------------UGAGU-----------UCGUugCGCu -5'
26475 5' -56 NC_005357.1 + 6739 0.66 0.588785
Target:  5'- uGGGCcGCCGCGCUCAA-UAGCG-GAa -3'
miRNA:   3'- gUCUGcCGGCGUGAGUUcGUUGCgCU- -5'
26475 5' -56 NC_005357.1 + 35187 0.66 0.588785
Target:  5'- uGGGCGGCCGaCAUcgcCGAGgGugaGCGCGGc -3'
miRNA:   3'- gUCUGCCGGC-GUGa--GUUCgU---UGCGCU- -5'
26475 5' -56 NC_005357.1 + 38056 0.66 0.588785
Target:  5'- aAGuCGGCCGuCGCcuUCAcgcgcaccGGCAACGCa- -3'
miRNA:   3'- gUCuGCCGGC-GUG--AGU--------UCGUUGCGcu -5'
26475 5' -56 NC_005357.1 + 30258 0.66 0.577673
Target:  5'- uCAGAUaGCUGCGCU--GGUcGCGCGAg -3'
miRNA:   3'- -GUCUGcCGGCGUGAguUCGuUGCGCU- -5'
26475 5' -56 NC_005357.1 + 26598 0.66 0.577673
Target:  5'- aCGGACGG-CGUGUUCGAGUccuGCGCGGu -3'
miRNA:   3'- -GUCUGCCgGCGUGAGUUCGu--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 8764 0.66 0.566608
Target:  5'- --cACGuGCCGC-UUCGGGCAgcACGCGGc -3'
miRNA:   3'- gucUGC-CGGCGuGAGUUCGU--UGCGCU- -5'
26475 5' -56 NC_005357.1 + 1357 0.66 0.555598
Target:  5'- -cGGCGGCCuuGCGCaUCcGGCGAC-CGAa -3'
miRNA:   3'- guCUGCCGG--CGUG-AGuUCGUUGcGCU- -5'
26475 5' -56 NC_005357.1 + 7519 0.66 0.555598
Target:  5'- aGGAUGGCguugucuaccgUGCGCUCG-GCGGCGUGc -3'
miRNA:   3'- gUCUGCCG-----------GCGUGAGUuCGUUGCGCu -5'
26475 5' -56 NC_005357.1 + 21298 0.66 0.555598
Target:  5'- -cGGCGGCCaaGCU-GGGCAGCGuCGAu -3'
miRNA:   3'- guCUGCCGGcgUGAgUUCGUUGC-GCU- -5'
26475 5' -56 NC_005357.1 + 30022 0.67 0.544651
Target:  5'- aGGACggcaucaaGGCCGCAUaCAAGC-GCGCa- -3'
miRNA:   3'- gUCUG--------CCGGCGUGaGUUCGuUGCGcu -5'
26475 5' -56 NC_005357.1 + 18569 0.67 0.533775
Target:  5'- uGGA-GGCCGCGCUCGcGGUGACGg-- -3'
miRNA:   3'- gUCUgCCGGCGUGAGU-UCGUUGCgcu -5'
26475 5' -56 NC_005357.1 + 41236 0.67 0.512264
Target:  5'- -cGACGG-CGUagaaAUUCAcGGCAGCGCGAu -3'
miRNA:   3'- guCUGCCgGCG----UGAGU-UCGUUGCGCU- -5'
26475 5' -56 NC_005357.1 + 29757 0.67 0.512264
Target:  5'- uCGGccuCGGCUGCuGC-CAGGCGcguGCGCGAg -3'
miRNA:   3'- -GUCu--GCCGGCG-UGaGUUCGU---UGCGCU- -5'
26475 5' -56 NC_005357.1 + 3456 0.67 0.512264
Target:  5'- aCAGAC-GCCGCGCgcccCGAagAACGCGAa -3'
miRNA:   3'- -GUCUGcCGGCGUGa---GUUcgUUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.