Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26475 | 5' | -56 | NC_005357.1 | + | 41842 | 0.66 | 0.615589 |
Target: 5'- gCAGGCGGCCaucaaACUCAAGgAacuggaaaccaauucGCGCGu -3' miRNA: 3'- -GUCUGCCGGcg---UGAGUUCgU---------------UGCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 4353 | 0.66 | 0.599934 |
Target: 5'- gCAGAggaauCGGCCGgACggCAGGCGgauGCGCa- -3' miRNA: 3'- -GUCU-----GCCGGCgUGa-GUUCGU---UGCGcu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 4039 | 0.66 | 0.599934 |
Target: 5'- aAGcCGGCCGCGg-CGAGCGGCaggccaGCGGc -3' miRNA: 3'- gUCuGCCGGCGUgaGUUCGUUG------CGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 8914 | 0.66 | 0.599934 |
Target: 5'- -cGGCGG-CGCGCUCGauGGCuucgGGCGUGGa -3' miRNA: 3'- guCUGCCgGCGUGAGU--UCG----UUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 8833 | 0.66 | 0.599934 |
Target: 5'- uCGGGCcaGCCGCAacgCGGGCcAGCGCGu -3' miRNA: 3'- -GUCUGc-CGGCGUga-GUUCG-UUGCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 19975 | 0.66 | 0.59324 |
Target: 5'- uCGGGCaGGCCGCcgauguccgcguagaACUCGccaacuugcucGGCAugGCGc -3' miRNA: 3'- -GUCUG-CCGGCG---------------UGAGU-----------UCGUugCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 6739 | 0.66 | 0.588785 |
Target: 5'- uGGGCcGCCGCGCUCAA-UAGCG-GAa -3' miRNA: 3'- gUCUGcCGGCGUGAGUUcGUUGCgCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 35187 | 0.66 | 0.588785 |
Target: 5'- uGGGCGGCCGaCAUcgcCGAGgGugaGCGCGGc -3' miRNA: 3'- gUCUGCCGGC-GUGa--GUUCgU---UGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 38056 | 0.66 | 0.588785 |
Target: 5'- aAGuCGGCCGuCGCcuUCAcgcgcaccGGCAACGCa- -3' miRNA: 3'- gUCuGCCGGC-GUG--AGU--------UCGUUGCGcu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 30258 | 0.66 | 0.577673 |
Target: 5'- uCAGAUaGCUGCGCU--GGUcGCGCGAg -3' miRNA: 3'- -GUCUGcCGGCGUGAguUCGuUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 26598 | 0.66 | 0.577673 |
Target: 5'- aCGGACGG-CGUGUUCGAGUccuGCGCGGu -3' miRNA: 3'- -GUCUGCCgGCGUGAGUUCGu--UGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 8764 | 0.66 | 0.566608 |
Target: 5'- --cACGuGCCGC-UUCGGGCAgcACGCGGc -3' miRNA: 3'- gucUGC-CGGCGuGAGUUCGU--UGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 1357 | 0.66 | 0.555598 |
Target: 5'- -cGGCGGCCuuGCGCaUCcGGCGAC-CGAa -3' miRNA: 3'- guCUGCCGG--CGUG-AGuUCGUUGcGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 7519 | 0.66 | 0.555598 |
Target: 5'- aGGAUGGCguugucuaccgUGCGCUCG-GCGGCGUGc -3' miRNA: 3'- gUCUGCCG-----------GCGUGAGUuCGUUGCGCu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 21298 | 0.66 | 0.555598 |
Target: 5'- -cGGCGGCCaaGCU-GGGCAGCGuCGAu -3' miRNA: 3'- guCUGCCGGcgUGAgUUCGUUGC-GCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 30022 | 0.67 | 0.544651 |
Target: 5'- aGGACggcaucaaGGCCGCAUaCAAGC-GCGCa- -3' miRNA: 3'- gUCUG--------CCGGCGUGaGUUCGuUGCGcu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 18569 | 0.67 | 0.533775 |
Target: 5'- uGGA-GGCCGCGCUCGcGGUGACGg-- -3' miRNA: 3'- gUCUgCCGGCGUGAGU-UCGUUGCgcu -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 41236 | 0.67 | 0.512264 |
Target: 5'- -cGACGG-CGUagaaAUUCAcGGCAGCGCGAu -3' miRNA: 3'- guCUGCCgGCG----UGAGU-UCGUUGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 29757 | 0.67 | 0.512264 |
Target: 5'- uCGGccuCGGCUGCuGC-CAGGCGcguGCGCGAg -3' miRNA: 3'- -GUCu--GCCGGCG-UGaGUUCGU---UGCGCU- -5' |
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26475 | 5' | -56 | NC_005357.1 | + | 3456 | 0.67 | 0.512264 |
Target: 5'- aCAGAC-GCCGCGCgcccCGAagAACGCGAa -3' miRNA: 3'- -GUCUGcCGGCGUGa---GUUcgUUGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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