miRNA display CGI


Results 1 - 20 of 266 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26477 3' -59.7 NC_005357.1 + 29114 1.1 0.000216
Target:  5'- aAGCCUACGCCGCCUACAACGCCGGCCc -3'
miRNA:   3'- -UCGGAUGCGGCGGAUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 29213 0.74 0.116237
Target:  5'- aGGaCUACGUgGUCaagaacaugcaggcgUACAACGCCGGCCa -3'
miRNA:   3'- -UCgGAUGCGgCGG---------------AUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 21690 0.74 0.124936
Target:  5'- cGCCUcuACGgCGCCaGCAGCauGUCGGCCu -3'
miRNA:   3'- uCGGA--UGCgGCGGaUGUUG--CGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14228 0.65 0.432436
Target:  5'- uGGCCgaccuggacaagGCGCCGCacCUGCuggGCGUgGGCa -3'
miRNA:   3'- -UCGGa-----------UGCGGCG--GAUGu--UGCGgCCGg -5'
26477 3' -59.7 NC_005357.1 + 40196 0.77 0.071143
Target:  5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3'
miRNA:   3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5'
26477 3' -59.7 NC_005357.1 + 25128 0.77 0.071143
Target:  5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3'
miRNA:   3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 24758 0.76 0.091851
Target:  5'- cGCCUACGCCcaGCCcgcCGACGCCaucaagaucguGGCCg -3'
miRNA:   3'- uCGGAUGCGG--CGGau-GUUGCGG-----------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 15176 0.75 0.094478
Target:  5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3'
miRNA:   3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 36052 0.75 0.105712
Target:  5'- cGGCCUGCGCCugaUUGcCGACGUgGGCCg -3'
miRNA:   3'- -UCGGAUGCGGcg-GAU-GUUGCGgCCGG- -5'
26477 3' -59.7 NC_005357.1 + 30997 0.74 0.11495
Target:  5'- cGCCUuauCGgCGaCCUGC-ACGCCGGCUc -3'
miRNA:   3'- uCGGAu--GCgGC-GGAUGuUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 25853 0.74 0.113044
Target:  5'- cGGCCUcguccggcGCGUCGCgCUACAACGUcuauaaggagcaaggCGGCCu -3'
miRNA:   3'- -UCGGA--------UGCGGCG-GAUGUUGCG---------------GCCGG- -5'
26477 3' -59.7 NC_005357.1 + 40408 0.75 0.102791
Target:  5'- cGCCUGCGCgacuuCGCCaGCgAGCGCCugGGCCu -3'
miRNA:   3'- uCGGAUGCG-----GCGGaUG-UUGCGG--CCGG- -5'
26477 3' -59.7 NC_005357.1 + 33852 0.79 0.051884
Target:  5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3'
miRNA:   3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5'
26477 3' -59.7 NC_005357.1 + 17099 0.74 0.113993
Target:  5'- cGGCCUggacaaucccggcgACGagCGCCggugGCAGgGCCGGCCg -3'
miRNA:   3'- -UCGGA--------------UGCg-GCGGa---UGUUgCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14996 0.78 0.059914
Target:  5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3'
miRNA:   3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5'
26477 3' -59.7 NC_005357.1 + 34290 0.75 0.097176
Target:  5'- cGCCgacaccCGCaCGCCcACAaccaACGCCGGCCg -3'
miRNA:   3'- uCGGau----GCG-GCGGaUGU----UGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 29032 0.74 0.11495
Target:  5'- cGCaacgAUGCCGCCUACAaccgcGCGCUGGgCa -3'
miRNA:   3'- uCGga--UGCGGCGGAUGU-----UGCGGCCgG- -5'
26477 3' -59.7 NC_005357.1 + 21811 0.74 0.118193
Target:  5'- aGGCCgACaCCGaCCUGCGACGCC-GCCu -3'
miRNA:   3'- -UCGGaUGcGGC-GGAUGUUGCGGcCGG- -5'
26477 3' -59.7 NC_005357.1 + 27557 0.78 0.060955
Target:  5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3'
miRNA:   3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5'
26477 3' -59.7 NC_005357.1 + 14841 0.77 0.071143
Target:  5'- cGCCaucugGCGCCGCCUGC--UGCCGGUg -3'
miRNA:   3'- uCGGa----UGCGGCGGAUGuuGCGGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.