miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26478 5' -56.5 NC_005357.1 + 42071 0.7 0.350244
Target:  5'- --uGUUCucgGGCcugGCGGACGGCcuGCUGCg -3'
miRNA:   3'- uguCAAG---CCG---CGCCUGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 41732 0.66 0.577508
Target:  5'- gGCGGUaucuugggCGGCcCGGcCGGC--GCCGCc -3'
miRNA:   3'- -UGUCAa-------GCCGcGCCuGCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 41433 0.71 0.3256
Target:  5'- cCAGU--GGCGCGGGCaGCGGGCUGa -3'
miRNA:   3'- uGUCAagCCGCGCCUGcCGUUUGGCg -5'
26478 5' -56.5 NC_005357.1 + 41063 0.69 0.431816
Target:  5'- uGCGcUUCGGuCGcCGGAUGcGCAAgGCCGCc -3'
miRNA:   3'- -UGUcAAGCC-GC-GCCUGC-CGUU-UGGCG- -5'
26478 5' -56.5 NC_005357.1 + 40288 0.69 0.394188
Target:  5'- uACGG--CGGCGCGGuugacCGGCu-GCUGCa -3'
miRNA:   3'- -UGUCaaGCCGCGCCu----GCCGuuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 39834 0.67 0.50237
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26478 5' -56.5 NC_005357.1 + 38880 0.7 0.367396
Target:  5'- -----gCGGCGCGGuuGGCgGGACUGCg -3'
miRNA:   3'- ugucaaGCCGCGCCugCCG-UUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 38542 0.71 0.29478
Target:  5'- -aAGUUCGGCG-GcGACGGCAGcGCgGCc -3'
miRNA:   3'- ugUCAAGCCGCgC-CUGCCGUU-UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 38040 0.69 0.422212
Target:  5'- -aAGgccCGGCGC-GACGGCGccuGGCUGCg -3'
miRNA:   3'- ugUCaa-GCCGCGcCUGCCGU---UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 37888 0.71 0.317676
Target:  5'- cCAGUUC--CGCGG-CGGCAcGACCGCc -3'
miRNA:   3'- uGUCAAGccGCGCCuGCCGU-UUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 37735 0.67 0.491965
Target:  5'- gGCGGcgUCGGUGCcuuucucaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG-----------CCUGCCGuu---UGgCG- -5'
26478 5' -56.5 NC_005357.1 + 37406 0.69 0.403395
Target:  5'- aGCGGggcaucgCGGCGCuGAaaGCGGACUGCg -3'
miRNA:   3'- -UGUCaa-----GCCGCGcCUgcCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 37310 0.7 0.376187
Target:  5'- uGCAGUUcaaCGGCGCcagccgcaccGGACgcugGGCcGGCCGCc -3'
miRNA:   3'- -UGUCAA---GCCGCG----------CCUG----CCGuUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35968 0.7 0.358749
Target:  5'- uGCAGUUCcuGCGC-GACGGCGAcgccuUCGCg -3'
miRNA:   3'- -UGUCAAGc-CGCGcCUGCCGUUu----GGCG- -5'
26478 5' -56.5 NC_005357.1 + 35848 0.7 0.376187
Target:  5'- cGCAGcccccUGGCcgagGCGGAUGGCAAGCCcuacGCg -3'
miRNA:   3'- -UGUCaa---GCCG----CGCCUGCCGUUUGG----CG- -5'
26478 5' -56.5 NC_005357.1 + 35435 0.72 0.252888
Target:  5'- gGCGaaUCgGGCGCGGACGcGCuu-CCGCg -3'
miRNA:   3'- -UGUcaAG-CCGCGCCUGC-CGuuuGGCG- -5'
26478 5' -56.5 NC_005357.1 + 35326 0.76 0.143539
Target:  5'- cGCAGUccaucgugcgcgUgGGCGCGccGugGGUAGGCCGCg -3'
miRNA:   3'- -UGUCA------------AgCCGCGC--CugCCGUUUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 34879 0.66 0.566576
Target:  5'- cCGGUggCGcCGCGGAuCGaGCAcGCCGCc -3'
miRNA:   3'- uGUCAa-GCcGCGCCU-GC-CGUuUGGCG- -5'
26478 5' -56.5 NC_005357.1 + 34769 0.68 0.451401
Target:  5'- -aAGaaCGGCGCGuGuACGGCAAggaGCCGg -3'
miRNA:   3'- ugUCaaGCCGCGC-C-UGCCGUU---UGGCg -5'
26478 5' -56.5 NC_005357.1 + 34713 0.66 0.577508
Target:  5'- aGCGGUgcaggCGGUGUGGGaucacuucgagGGCuaccGGCCGCa -3'
miRNA:   3'- -UGUCAa----GCCGCGCCUg----------CCGu---UUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.