miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26481 3' -59.8 NC_005357.1 + 28395 0.66 0.390231
Target:  5'- -aGUUCGACGCCgGCGgCgCGGcGCCAGu -3'
miRNA:   3'- cgCGAGUUGUGGgCGUgG-GUC-CGGUU- -5'
26481 3' -59.8 NC_005357.1 + 32105 0.66 0.389326
Target:  5'- uUGCUCAACGCCCuggccGCugccgaccucgacGCCCccgaaucccucaAGGCCGAa -3'
miRNA:   3'- cGCGAGUUGUGGG-----CG-------------UGGG------------UCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 34251 0.66 0.38124
Target:  5'- cGgGCagGACGCCaGCGCCUuccuGGGCCGc -3'
miRNA:   3'- -CgCGagUUGUGGgCGUGGG----UCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 24664 0.66 0.38124
Target:  5'- gGUGUugUC-GCGCCCGC-CgCGGGCCAc -3'
miRNA:   3'- -CGCG--AGuUGUGGGCGuGgGUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 36014 0.66 0.38124
Target:  5'- gGCGCcaaCGACAUgggCCGCGacuacaCCGGGCCGg -3'
miRNA:   3'- -CGCGa--GUUGUG---GGCGUg-----GGUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 30995 0.66 0.38124
Target:  5'- cGCGCcuuaUCGGCgACCUGCACgCCGGcucGCCGc -3'
miRNA:   3'- -CGCG----AGUUG-UGGGCGUG-GGUC---CGGUu -5'
26481 3' -59.8 NC_005357.1 + 36045 0.66 0.375912
Target:  5'- gGCGCcgCGGCggccgaccugguguaACCCaGCGCCCcGGCCu- -3'
miRNA:   3'- -CGCGa-GUUG---------------UGGG-CGUGGGuCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 38034 0.66 0.372388
Target:  5'- aCGCUCAAgGCCCGgCGCgaCGGcGCCu- -3'
miRNA:   3'- cGCGAGUUgUGGGC-GUGg-GUC-CGGuu -5'
26481 3' -59.8 NC_005357.1 + 14713 0.66 0.372388
Target:  5'- uGCGcCUCcAUGCCCuGCGCCCGGuaGCCc- -3'
miRNA:   3'- -CGC-GAGuUGUGGG-CGUGGGUC--CGGuu -5'
26481 3' -59.8 NC_005357.1 + 15944 0.66 0.372388
Target:  5'- -gGCUgCGGCGCCUuCGCgUAGGCCAGu -3'
miRNA:   3'- cgCGA-GUUGUGGGcGUGgGUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 33214 0.66 0.372388
Target:  5'- cGCGCcgCAGaacguGCgCCGCGCCgccgagCAGGCCAAc -3'
miRNA:   3'- -CGCGa-GUUg----UG-GGCGUGG------GUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 35364 0.66 0.363677
Target:  5'- cUGUUCAaacgacGCugCCGC-CCgAGGCCAu -3'
miRNA:   3'- cGCGAGU------UGugGGCGuGGgUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 14823 0.66 0.363677
Target:  5'- gGCGCU----GCCUuCGCCCAGGUCGAu -3'
miRNA:   3'- -CGCGAguugUGGGcGUGGGUCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 14975 0.66 0.363677
Target:  5'- cGCGCUgGcAUACCaGCGCCaGGGCCu- -3'
miRNA:   3'- -CGCGAgU-UGUGGgCGUGGgUCCGGuu -5'
26481 3' -59.8 NC_005357.1 + 997 0.66 0.355109
Target:  5'- uCGCcCGcUGCCCGCGCCaCuGGCCGGg -3'
miRNA:   3'- cGCGaGUuGUGGGCGUGG-GuCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 18250 0.66 0.355109
Target:  5'- cGCGCUCAuggacACGCCgaagcgCGCAgCCgucgaggcgcuGGGCCAGg -3'
miRNA:   3'- -CGCGAGU-----UGUGG------GCGUgGG-----------UCCGGUU- -5'
26481 3' -59.8 NC_005357.1 + 12626 0.66 0.35426
Target:  5'- cGCGCUCGGCAUcgCUGCugCCguccuuuggcgucGGGUCGu -3'
miRNA:   3'- -CGCGAGUUGUG--GGCGugGG-------------UCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 12270 0.66 0.346683
Target:  5'- gGCGC-CAACugCCGCugauguCCgacgcggugCAGGCCGg -3'
miRNA:   3'- -CGCGaGUUGugGGCGu-----GG---------GUCCGGUu -5'
26481 3' -59.8 NC_005357.1 + 25079 0.67 0.338402
Target:  5'- uCGCcaccCAGCGCagCGCGCCCGGcGCCGu -3'
miRNA:   3'- cGCGa---GUUGUGg-GCGUGGGUC-CGGUu -5'
26481 3' -59.8 NC_005357.1 + 5353 0.67 0.338402
Target:  5'- cGCGCUgCGugGCcgccugcaCCGCGCCCAGGg--- -3'
miRNA:   3'- -CGCGA-GUugUG--------GGCGUGGGUCCgguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.