miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26485 3' -54.6 NC_005357.1 + 26379 1.11 0.000544
Target:  5'- gGCCACGUGCGCGAACUGGCCUACAACu -3'
miRNA:   3'- -CGGUGCACGCGCUUGACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 41966 0.69 0.496019
Target:  5'- aCCGCGacaGCGCccgcaAGCUGGCCgcGCAGCa -3'
miRNA:   3'- cGGUGCa--CGCGc----UUGACCGGa-UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 16152 0.69 0.506695
Target:  5'- cGCgCGCGaUGCGCGAGCcgaccaGGCCgGCGGg -3'
miRNA:   3'- -CG-GUGC-ACGCGCUUGa-----CCGGaUGUUg -5'
26485 3' -54.6 NC_005357.1 + 38551 0.66 0.685297
Target:  5'- gGCgACG-GCaGCGc---GGCCUACAGCg -3'
miRNA:   3'- -CGgUGCaCG-CGCuugaCCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 5198 0.75 0.213922
Target:  5'- -gCugGUGCugGUGGuGCUGGCCUGCAACc -3'
miRNA:   3'- cgGugCACG--CGCU-UGACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 27576 0.74 0.238317
Target:  5'- cGCCcaGCGUGCG-GcGCUGGCCgcCAACg -3'
miRNA:   3'- -CGG--UGCACGCgCuUGACCGGauGUUG- -5'
26485 3' -54.6 NC_005357.1 + 8452 0.74 0.251365
Target:  5'- cGCgAUGUcgGCGuCGAGgUGGCCUGCGAUg -3'
miRNA:   3'- -CGgUGCA--CGC-GCUUgACCGGAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 41287 0.73 0.271323
Target:  5'- cGCCGcCGUaGCGCGAGCUaacgguuacaccgGGCCgaugcGCGACa -3'
miRNA:   3'- -CGGU-GCA-CGCGCUUGA-------------CCGGa----UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 10720 0.73 0.301685
Target:  5'- cCCGCGcGCgGCGGGCUGGUcaggcggugCUGCAGCa -3'
miRNA:   3'- cGGUGCaCG-CGCUUGACCG---------GAUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 2575 0.69 0.484394
Target:  5'- gGCCcagcGCGUGCGCGcGCUuGCCgcccuguUGCAACc -3'
miRNA:   3'- -CGG----UGCACGCGCuUGAcCGG-------AUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 29942 0.69 0.454397
Target:  5'- cGCCACuGUGCGCG-GCUGGUUcuCGAa -3'
miRNA:   3'- -CGGUG-CACGCGCuUGACCGGauGUUg -5'
26485 3' -54.6 NC_005357.1 + 12512 0.73 0.300914
Target:  5'- cCCACGgcacugaUGCGCGAACUGGU--ACGGCc -3'
miRNA:   3'- cGGUGC-------ACGCGCUUGACCGgaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 17748 0.79 0.115131
Target:  5'- aGCCugG-GCGUGGACgUGGCCcGCGGCg -3'
miRNA:   3'- -CGGugCaCGCGCUUG-ACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 41819 0.69 0.464629
Target:  5'- uCCACG-GCGCu-GCUGGCCgacccgcagGCGGCc -3'
miRNA:   3'- cGGUGCaCGCGcuUGACCGGa--------UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 25627 0.75 0.202547
Target:  5'- cGCCugG-GCGCGAccaACUGGCaacugGCGACc -3'
miRNA:   3'- -CGGugCaCGCGCU---UGACCGga---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 39583 0.73 0.272033
Target:  5'- cGCUACG-GCuugGCGGGCUGGCCUuuccuCAAUa -3'
miRNA:   3'- -CGGUGCaCG---CGCUUGACCGGAu----GUUG- -5'
26485 3' -54.6 NC_005357.1 + 12214 0.69 0.464629
Target:  5'- cGCCgaguGCGUGCGCGuGCUcaaGCCcgGCGGCu -3'
miRNA:   3'- -CGG----UGCACGCGCuUGAc--CGGa-UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 7243 0.69 0.506695
Target:  5'- gGCCACuG-GCGCGGGCcgaugucgccGGCCUuguGCAGCu -3'
miRNA:   3'- -CGGUG-CaCGCGCUUGa---------CCGGA---UGUUG- -5'
26485 3' -54.6 NC_005357.1 + 13864 0.75 0.208167
Target:  5'- gGCCgACGUGCGCGccgcgaUGGCCgGCGGCc -3'
miRNA:   3'- -CGG-UGCACGCGCuug---ACCGGaUGUUG- -5'
26485 3' -54.6 NC_005357.1 + 32641 0.74 0.238317
Target:  5'- uCgGCGUGCGCGAcCUGGCCgcgUGgAACg -3'
miRNA:   3'- cGgUGCACGCGCUuGACCGG---AUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.