miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26487 3' -54.5 NC_005357.1 + 29129 0.66 0.698414
Target:  5'- aCAACGCCggCC-CCGg--CGcGCUGCa -3'
miRNA:   3'- -GUUGCGGuaGGcGGUauaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 27828 0.66 0.687314
Target:  5'- -cGCGCUGcCCGCgGUggCGccgGCCGCg -3'
miRNA:   3'- guUGCGGUaGGCGgUAuaGCa--CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 27669 0.66 0.676159
Target:  5'- gGGCGCCAccUCCaCCGUGgucUUGgaauacagGCCGCg -3'
miRNA:   3'- gUUGCGGU--AGGcGGUAU---AGCa-------CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 26182 1.11 0.000586
Target:  5'- cCAACGCCAUCCGCCAUAUCGUGCCGCu -3'
miRNA:   3'- -GUUGCGGUAGGCGGUAUAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 26162 0.68 0.586278
Target:  5'- --uCGCCGUCUGCgAUG-CG-GUCGCa -3'
miRNA:   3'- guuGCGGUAGGCGgUAUaGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 26115 0.68 0.531065
Target:  5'- -uGCGCCAUgCCGgCAUGuguUCGUcGCgGCa -3'
miRNA:   3'- guUGCGGUA-GGCgGUAU---AGCA-CGgCG- -5'
26487 3' -54.5 NC_005357.1 + 26100 0.66 0.698414
Target:  5'- aGugGCaccgaAUCgGCCAUGUCGUaCuCGCu -3'
miRNA:   3'- gUugCGg----UAGgCGGUAUAGCAcG-GCG- -5'
26487 3' -54.5 NC_005357.1 + 25987 0.66 0.658224
Target:  5'- aCGACGCCGUguucaacgCCGCCGgcgauuaccccgCG-GCCGUg -3'
miRNA:   3'- -GUUGCGGUA--------GGCGGUaua---------GCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 25381 0.7 0.471638
Target:  5'- aGGCGCCAgaagCCcuuuugcgaguuguaGCCGUc-CGUGCCGCc -3'
miRNA:   3'- gUUGCGGUa---GG---------------CGGUAuaGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 25354 0.68 0.586278
Target:  5'- -cGCGCCGgcUUCGCCu--UCGUG-CGCg -3'
miRNA:   3'- guUGCGGU--AGGCGGuauAGCACgGCG- -5'
26487 3' -54.5 NC_005357.1 + 25323 0.66 0.687314
Target:  5'- cCGGCGCUcgUCGCCGggAUUGUccagGCCGg -3'
miRNA:   3'- -GUUGCGGuaGGCGGUa-UAGCA----CGGCg -5'
26487 3' -54.5 NC_005357.1 + 25049 0.7 0.44721
Target:  5'- -cGCGCgAUCCGCCGUuaccAUCGgGCaGCa -3'
miRNA:   3'- guUGCGgUAGGCGGUA----UAGCaCGgCG- -5'
26487 3' -54.5 NC_005357.1 + 24775 0.73 0.312362
Target:  5'- cCGACGCCAUCaagaucgugGCCGUA-C-UGCCGCa -3'
miRNA:   3'- -GUUGCGGUAGg--------CGGUAUaGcACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24694 0.66 0.66496
Target:  5'- -cACGCCcaggcuGUCCaucgguGCCAgucgGUCGgGCCGCu -3'
miRNA:   3'- guUGCGG------UAGG------CGGUa---UAGCaCGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24591 0.7 0.4274
Target:  5'- ---gGCCGUCCGgCGUGUCcuUGCCGg -3'
miRNA:   3'- guugCGGUAGGCgGUAUAGc-ACGGCg -5'
26487 3' -54.5 NC_005357.1 + 24416 0.68 0.564013
Target:  5'- aAGCGCag-CCgGCCcgauuUGUCgGUGCCGCg -3'
miRNA:   3'- gUUGCGguaGG-CGGu----AUAG-CACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 24019 0.74 0.260848
Target:  5'- aCAACGCCAccUUCGCCGa--CGUGgCCGCc -3'
miRNA:   3'- -GUUGCGGU--AGGCGGUauaGCAC-GGCG- -5'
26487 3' -54.5 NC_005357.1 + 21734 0.66 0.687314
Target:  5'- gGAUGCCA-CCGUUGgg-CGcgGCCGCg -3'
miRNA:   3'- gUUGCGGUaGGCGGUauaGCa-CGGCG- -5'
26487 3' -54.5 NC_005357.1 + 20105 0.66 0.676159
Target:  5'- uCGGCGCguUCggcacgGCCAgcagcAUCGUGCUGCc -3'
miRNA:   3'- -GUUGCGguAGg-----CGGUa----UAGCACGGCG- -5'
26487 3' -54.5 NC_005357.1 + 19615 0.68 0.564013
Target:  5'- --uUGCCGUCCgggGUCAUG-CGgGCCGCg -3'
miRNA:   3'- guuGCGGUAGG---CGGUAUaGCaCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.