miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 42199 0.67 0.68857
Target:  5'- ---cGCCGGCcCUA-CAACAuGCgGCa -3'
miRNA:   3'- gaaaCGGCCGuGAUgGUUGUuCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 42047 0.67 0.733395
Target:  5'- ---cGCUGGCcgcGCUcaAUCGGCAGGCCaaGCa -3'
miRNA:   3'- gaaaCGGCCG---UGA--UGGUUGUUCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 41911 0.7 0.551407
Target:  5'- ---gGCCGaCAgaACCGccuGCAAGCCGCc -3'
miRNA:   3'- gaaaCGGCcGUgaUGGU---UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41828 0.68 0.654284
Target:  5'- --cUGCUGGC-CgACCcGCAGGCgGCc -3'
miRNA:   3'- gaaACGGCCGuGaUGGuUGUUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 41752 0.68 0.642794
Target:  5'- ---gGCCGGCGCcGCCGua-GGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUuguUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 41698 0.73 0.394406
Target:  5'- ---gGCCGGCGUUGUCGGCaAAGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUGGUUG-UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41438 0.67 0.726763
Target:  5'- --gUGaaccaCGGCACcgGCCAggcggccaaguggcuGCAAGCUGCc -3'
miRNA:   3'- gaaACg----GCCGUGa-UGGU---------------UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41379 0.69 0.585411
Target:  5'- ---cGCCGGUucgcggcgacauGCUGCCG-CcGGCCGUg -3'
miRNA:   3'- gaaaCGGCCG------------UGAUGGUuGuUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40959 0.77 0.222843
Target:  5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3'
miRNA:   3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40290 0.67 0.68857
Target:  5'- ---cGgCGGCGCgguugACCGGCu-GCUGCa -3'
miRNA:   3'- gaaaCgGCCGUGa----UGGUUGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40059 0.74 0.307111
Target:  5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 40008 0.72 0.443678
Target:  5'- ---gGCCGGCcuGCUGCCGuacaccuacGCuuGCCGCc -3'
miRNA:   3'- gaaaCGGCCG--UGAUGGU---------UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39682 0.72 0.403012
Target:  5'- ---gGUCGGCACgcCCGAgcagcgcCGGGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGauGGUU-------GUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39593 0.71 0.496227
Target:  5'- --gUGCUGGCGCcGCUGcGCGuGGCCGCg -3'
miRNA:   3'- gaaACGGCCGUGaUGGU-UGU-UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 39565 0.66 0.755193
Target:  5'- -cUUGCaUGGCuCUGCCAACGcuacGGCUugGCg -3'
miRNA:   3'- gaAACG-GCCGuGAUGGUUGU----UCGG--CG- -5'
26488 5' -52.6 NC_005357.1 + 38351 0.77 0.222231
Target:  5'- ---gGCCGGCcugaugGCUACCAAUccccccuGGGCCGCu -3'
miRNA:   3'- gaaaCGGCCG------UGAUGGUUG-------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 38197 0.7 0.550283
Target:  5'- ---aGCUGGCAgaaaacgUUACgCAagccGCAAGCCGCg -3'
miRNA:   3'- gaaaCGGCCGU-------GAUG-GU----UGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 38170 0.72 0.443678
Target:  5'- --aUGCCGGCGCUgacgGCCGGCA--CCGa -3'
miRNA:   3'- gaaACGGCCGUGA----UGGUUGUucGGCg -5'
26488 5' -52.6 NC_005357.1 + 38008 0.67 0.699897
Target:  5'- ---gGCCgGGUACgACCuACGAcuGCCGCa -3'
miRNA:   3'- gaaaCGG-CCGUGaUGGuUGUU--CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 37796 0.66 0.765894
Target:  5'- -cUUGCCGacccugcggcaGCGCggGCCAACAuuGGCCugGCu -3'
miRNA:   3'- gaAACGGC-----------CGUGa-UGGUUGU--UCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.