miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26488 5' -52.6 NC_005357.1 + 26053 1.13 0.000643
Target:  5'- gCUUUGCCGGCACUACCAACAAGCCGCa -3'
miRNA:   3'- -GAAACGGCCGUGAUGGUUGUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14601 0.72 0.433545
Target:  5'- ---gGCCGGCGCcACCG-CGGGCagCGCg -3'
miRNA:   3'- gaaaCGGCCGUGaUGGUuGUUCG--GCG- -5'
26488 5' -52.6 NC_005357.1 + 38170 0.72 0.443678
Target:  5'- --aUGCCGGCGCUgacgGCCGGCA--CCGa -3'
miRNA:   3'- gaaACGGCCGUGA----UGGUUGUucGGCg -5'
26488 5' -52.6 NC_005357.1 + 18797 0.66 0.790937
Target:  5'- ---cGCCGGCuaccGCgaaACCAACcgcacguuuuaccggGGGCUGCa -3'
miRNA:   3'- gaaaCGGCCG----UGa--UGGUUG---------------UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 29694 0.76 0.24851
Target:  5'- uCUggGCgCGGCACccagcACCAACGGGCCGg -3'
miRNA:   3'- -GAaaCG-GCCGUGa----UGGUUGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 22226 0.75 0.294595
Target:  5'- ---cGCgGGCGCUGCCAagaccgagggcgacgACAaggcgaAGCCGCa -3'
miRNA:   3'- gaaaCGgCCGUGAUGGU---------------UGU------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 40059 0.74 0.307111
Target:  5'- ---cGCgGGCGuCUGCCAcguGCAGGCCGa -3'
miRNA:   3'- gaaaCGgCCGU-GAUGGU---UGUUCGGCg -5'
26488 5' -52.6 NC_005357.1 + 17799 0.74 0.340161
Target:  5'- ---cGCCGGCAC-GCCAugugguucgACGuGCCGCu -3'
miRNA:   3'- gaaaCGGCCGUGaUGGU---------UGUuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 13856 0.73 0.394406
Target:  5'- --cUGCCGGUg--GCCGACGugcgcGCCGCg -3'
miRNA:   3'- gaaACGGCCGugaUGGUUGUu----CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 33636 0.72 0.433545
Target:  5'- --cUGaCCGGCGCgGCCGACccaucgugcGCCGCg -3'
miRNA:   3'- gaaAC-GGCCGUGaUGGUUGuu-------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 41698 0.73 0.394406
Target:  5'- ---gGCCGGCGUUGUCGGCaAAGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGAUGGUUG-UUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 14977 0.73 0.357627
Target:  5'- ---cGCUGGCA-UACCAGCGccagggccugcGGCCGCc -3'
miRNA:   3'- gaaaCGGCCGUgAUGGUUGU-----------UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30145 0.81 0.108976
Target:  5'- ---aGCCGGCACgcuggGCCAGCAAcCCGCc -3'
miRNA:   3'- gaaaCGGCCGUGa----UGGUUGUUcGGCG- -5'
26488 5' -52.6 NC_005357.1 + 30825 0.72 0.403975
Target:  5'- ---cGCUGGCACUgcugcccggcgGCCAGCcGGCgGCc -3'
miRNA:   3'- gaaaCGGCCGUGA-----------UGGUUGuUCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 40959 0.77 0.222843
Target:  5'- ----cCCGGC-CUGCCAGgAGGCCGCc -3'
miRNA:   3'- gaaacGGCCGuGAUGGUUgUUCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 20178 0.73 0.348816
Target:  5'- ---gGCCGGCgaauacgccaucGCgGCCGACAaccagGGCCGCg -3'
miRNA:   3'- gaaaCGGCCG------------UGaUGGUUGU-----UCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 25794 0.72 0.410761
Target:  5'- ---gGCCGGCACcugcACCAACAaccucuucaccaacGGCgGCg -3'
miRNA:   3'- gaaaCGGCCGUGa---UGGUUGU--------------UCGgCG- -5'
26488 5' -52.6 NC_005357.1 + 40008 0.72 0.443678
Target:  5'- ---gGCCGGCcuGCUGCCGuacaccuacGCuuGCCGCc -3'
miRNA:   3'- gaaaCGGCCG--UGAUGGU---------UGuuCGGCG- -5'
26488 5' -52.6 NC_005357.1 + 27509 0.76 0.24851
Target:  5'- ---aGUCGGCACUugaggccgGCCAGCAGcagaucGCCGCg -3'
miRNA:   3'- gaaaCGGCCGUGA--------UGGUUGUU------CGGCG- -5'
26488 5' -52.6 NC_005357.1 + 11415 0.75 0.299242
Target:  5'- cCUcgGCCGGCAa-GCCcgugGACAGGUCGCg -3'
miRNA:   3'- -GAaaCGGCCGUgaUGG----UUGUUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.