miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 5' -53.7 NC_005357.1 + 12832 0.66 0.768269
Target:  5'- uGGACaacuGGCAAaccgcgcgccUGggCGCGgCCGACCUGa -3'
miRNA:   3'- -CCUG----CUGUU----------AUa-GCGCgGGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 9563 0.66 0.757846
Target:  5'- gGGcGCGACAAUcUCG-GCgCCGACCg-- -3'
miRNA:   3'- -CC-UGCUGUUAuAGCgCG-GGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 17854 0.66 0.757846
Target:  5'- cGGACGGCccgacCGUGgCCGGCCUc- -3'
miRNA:   3'- -CCUGCUGuuauaGCGCgGGCUGGAca -5'
26489 5' -53.7 NC_005357.1 + 15162 0.66 0.74729
Target:  5'- aGGGCGACGgcugAUGUUGCuCCUGACaUGg -3'
miRNA:   3'- -CCUGCUGU----UAUAGCGcGGGCUGgACa -5'
26489 5' -53.7 NC_005357.1 + 2322 0.66 0.74729
Target:  5'- -aGCGACAGgcacagAUCGCGCagccuguccUCGAUCUGUu -3'
miRNA:   3'- ccUGCUGUUa-----UAGCGCG---------GGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 36029 0.66 0.736611
Target:  5'- cGACGACAucaccgAggGCGCcgcggcggCCGACCUGg -3'
miRNA:   3'- cCUGCUGUua----UagCGCG--------GGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 14768 0.66 0.725823
Target:  5'- cGGugGAg---GUgGCGCCC-ACCUGg -3'
miRNA:   3'- -CCugCUguuaUAgCGCGGGcUGGACa -5'
26489 5' -53.7 NC_005357.1 + 18726 0.66 0.725823
Target:  5'- -cGCGACcugggCGCuaCCGGCCUGUa -3'
miRNA:   3'- ccUGCUGuuauaGCGcgGGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 30985 0.66 0.724739
Target:  5'- --cUGcCGGUGUCGCGCCuuaucggCGACCUGc -3'
miRNA:   3'- ccuGCuGUUAUAGCGCGG-------GCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 28774 0.67 0.714938
Target:  5'- cGGcGCGcACGGcGUCGCGCuuGcCCUGg -3'
miRNA:   3'- -CC-UGC-UGUUaUAGCGCGggCuGGACa -5'
26489 5' -53.7 NC_005357.1 + 37506 0.67 0.703967
Target:  5'- cGAgGGCAAgaagcugGUCGuCG-CCGACCUGUc -3'
miRNA:   3'- cCUgCUGUUa------UAGC-GCgGGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 18846 0.67 0.692923
Target:  5'- uGACGGCcAUcGUCGCcccccGCCCGcACCUGc -3'
miRNA:   3'- cCUGCUGuUA-UAGCG-----CGGGC-UGGACa -5'
26489 5' -53.7 NC_005357.1 + 24334 0.67 0.692923
Target:  5'- aGGCGGCAGag-CGaUGCCCGugUUGUu -3'
miRNA:   3'- cCUGCUGUUauaGC-GCGGGCugGACA- -5'
26489 5' -53.7 NC_005357.1 + 18663 0.67 0.692923
Target:  5'- gGGGCGGuCGcc--CGCcCCCGGCCUGUu -3'
miRNA:   3'- -CCUGCU-GUuauaGCGcGGGCUGGACA- -5'
26489 5' -53.7 NC_005357.1 + 8184 0.67 0.681819
Target:  5'- cGGAugcugcCGGCGAUuucAUCGCGCaCGGCCUcGUa -3'
miRNA:   3'- -CCU------GCUGUUA---UAGCGCGgGCUGGA-CA- -5'
26489 5' -53.7 NC_005357.1 + 8574 0.67 0.670664
Target:  5'- uGGGCGuCGuaggccgCGCGUgCGGCCUGg -3'
miRNA:   3'- -CCUGCuGUuaua---GCGCGgGCUGGACa -5'
26489 5' -53.7 NC_005357.1 + 10000 0.68 0.63702
Target:  5'- gGGuCGAaAGUGccgCGCGCCCGGCCc-- -3'
miRNA:   3'- -CCuGCUgUUAUa--GCGCGGGCUGGaca -5'
26489 5' -53.7 NC_005357.1 + 33681 0.68 0.63702
Target:  5'- cGGcACGugAAUA-CGCGCgCGcCCUGg -3'
miRNA:   3'- -CC-UGCugUUAUaGCGCGgGCuGGACa -5'
26489 5' -53.7 NC_005357.1 + 1112 0.68 0.614549
Target:  5'- -cGCGGC-AUGUCGCGCaUCGGCCcgGUg -3'
miRNA:   3'- ccUGCUGuUAUAGCGCG-GGCUGGa-CA- -5'
26489 5' -53.7 NC_005357.1 + 17419 0.68 0.614549
Target:  5'- cGGACGGCAAcccgcUGUCGUcgGCCCccuuuGugCUGg -3'
miRNA:   3'- -CCUGCUGUU-----AUAGCG--CGGG-----CugGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.