miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 41280 0.71 0.593028
Target:  5'- gCGUGACCGCCGcCGUagcgCGAGCuAACGGu- -3'
miRNA:   3'- -GCACUGGCGGU-GCA----GCUUG-UUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 39679 0.67 0.847779
Target:  5'- aGUGGUCGgCACGccCGAGCAGCGccGGGc -3'
miRNA:   3'- gCACUGGCgGUGCa-GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 39336 0.73 0.473083
Target:  5'- gGUGGuuGCCGCGugUCGAAgGGCAuGGg -3'
miRNA:   3'- gCACUggCGGUGC--AGCUUgUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 38851 0.66 0.881063
Target:  5'- aCGUGAcCCGgCGCGUCGcugaaauuuauGCGGCGcGGu -3'
miRNA:   3'- -GCACU-GGCgGUGCAGCu----------UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 36857 0.66 0.873131
Target:  5'- gGUGGCgGCCAgcguuggcgcCGUCGAuaccguggcggGCGACcuGGg -3'
miRNA:   3'- gCACUGgCGGU----------GCAGCU-----------UGUUGuuCC- -5'
26490 3' -51.4 NC_005357.1 + 35058 0.71 0.615618
Target:  5'- gGUGcCCGCCGCuggaCGAACGACGccgAGGu -3'
miRNA:   3'- gCACuGGCGGUGca--GCUUGUUGU---UCC- -5'
26490 3' -51.4 NC_005357.1 + 34275 0.68 0.800872
Target:  5'- --gGGCCGCaucauCGaggUGAACGGCAAGGg -3'
miRNA:   3'- gcaCUGGCGgu---GCa--GCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 34228 0.74 0.452528
Target:  5'- -cUGGCCGCCAUGUCGcuGACGAacGGGc -3'
miRNA:   3'- gcACUGGCGGUGCAGC--UUGUUguUCC- -5'
26490 3' -51.4 NC_005357.1 + 33120 0.69 0.705711
Target:  5'- aCGUGcGCCGCCAgGUCGc----CGAGGa -3'
miRNA:   3'- -GCAC-UGGCGGUgCAGCuuguuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 32648 0.71 0.615618
Target:  5'- gCGcGACCugGCCGCGUgGAACGAUcuGGa -3'
miRNA:   3'- -GCaCUGG--CGGUGCAgCUUGUUGuuCC- -5'
26490 3' -51.4 NC_005357.1 + 31674 0.66 0.886454
Target:  5'- gCG-GGCCGaagucgagcgcgccCUugG-CGAGCAGCAAGGc -3'
miRNA:   3'- -GCaCUGGC--------------GGugCaGCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 29201 0.69 0.749306
Target:  5'- -aUGACCGgCAgGUCGGACGcgcGCAuGGc -3'
miRNA:   3'- gcACUGGCgGUgCAGCUUGU---UGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 28686 0.72 0.537323
Target:  5'- gCGcGGCgCGCCACGUCGuuC-ACAAGGu -3'
miRNA:   3'- -GCaCUG-GCGGUGCAGCuuGuUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 28338 0.68 0.770398
Target:  5'- uCGaUGGCCuugGCCuCGUCGGGCAGCGcgcGGa -3'
miRNA:   3'- -GC-ACUGG---CGGuGCAGCUUGUUGUu--CC- -5'
26490 3' -51.4 NC_005357.1 + 28112 0.72 0.563882
Target:  5'- gGUGAUcguggucacgcgguaCGCCugGUCGGGCGGCAGc- -3'
miRNA:   3'- gCACUG---------------GCGGugCAGCUUGUUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 25694 1.12 0.001354
Target:  5'- gCGUGACCGCCACGUCGAACAACAAGGg -3'
miRNA:   3'- -GCACUGGCGGUGCAGCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 24037 0.78 0.250026
Target:  5'- aCGUGGCCGCCACcggCGccauCGGCAAGGc -3'
miRNA:   3'- -GCACUGGCGGUGca-GCuu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 22670 0.67 0.847779
Target:  5'- --aGACCGCCuCGUgGccGGCAACAAcGGc -3'
miRNA:   3'- gcaCUGGCGGuGCAgC--UUGUUGUU-CC- -5'
26490 3' -51.4 NC_005357.1 + 22420 0.66 0.888724
Target:  5'- --aGGCgCGCCAUGcCGAGCAaguugGCGAGu -3'
miRNA:   3'- gcaCUG-GCGGUGCaGCUUGU-----UGUUCc -5'
26490 3' -51.4 NC_005357.1 + 20848 0.74 0.461718
Target:  5'- -aUGACCGCCACcgaagugGcCGAGCGGCAcgAGGa -3'
miRNA:   3'- gcACUGGCGGUG-------CaGCUUGUUGU--UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.