miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 5' -57.4 NC_005357.1 + 42308 0.66 0.525035
Target:  5'- gCACCUA-CGCgaaGUGGUUggACGGCgCg -3'
miRNA:   3'- -GUGGAUgGCGaugCACCAG--UGCCGgG- -5'
26490 5' -57.4 NC_005357.1 + 41632 0.66 0.514521
Target:  5'- cCACCUGCUGacgGCGauUGcgcaGCGGCCCg -3'
miRNA:   3'- -GUGGAUGGCga-UGC--ACcag-UGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 41045 0.68 0.396539
Target:  5'- aACCgUugUGC-GCGUGGcCGCGGCgCCc -3'
miRNA:   3'- gUGG-AugGCGaUGCACCaGUGCCG-GG- -5'
26490 5' -57.4 NC_005357.1 + 40721 0.67 0.49376
Target:  5'- uCGCC-ACCGacacgauggACGaauUGGUCAUGGCUCg -3'
miRNA:   3'- -GUGGaUGGCga-------UGC---ACCAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 40206 0.68 0.443655
Target:  5'- cCGCCUGCUGC-GCGUGGU-GCuaCCCg -3'
miRNA:   3'- -GUGGAUGGCGaUGCACCAgUGccGGG- -5'
26490 5' -57.4 NC_005357.1 + 39594 0.71 0.290106
Target:  5'- uGCUggcGCCGCUgcGCGUGGcCGCgagcaccuGGCCCg -3'
miRNA:   3'- gUGGa--UGGCGA--UGCACCaGUG--------CCGGG- -5'
26490 5' -57.4 NC_005357.1 + 38388 0.69 0.361244
Target:  5'- gGCCUGCCGCU-CGc---CGCGGCCg -3'
miRNA:   3'- gUGGAUGGCGAuGCaccaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 38219 0.75 0.158409
Target:  5'- aGCCgcaaGCCGCgACGUGcUCGCGGCCa -3'
miRNA:   3'- gUGGa---UGGCGaUGCACcAGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 37101 0.74 0.176615
Target:  5'- uGCCaUGCUGCgccACGUGcUCGCGGCCUa -3'
miRNA:   3'- gUGG-AUGGCGa--UGCACcAGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 36776 0.66 0.567826
Target:  5'- aCAgCUACCGCUGguuuccgcCGUG--UACGGCCa -3'
miRNA:   3'- -GUgGAUGGCGAU--------GCACcaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 36640 0.73 0.20197
Target:  5'- gGCgCUGCCGCgaugGCGggacacgaUGGUCAaGGCCCu -3'
miRNA:   3'- gUG-GAUGGCGa---UGC--------ACCAGUgCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 35830 0.68 0.424426
Target:  5'- aCGCCaUGCU-CUACGUGGUgC-CGGCCg -3'
miRNA:   3'- -GUGG-AUGGcGAUGCACCA-GuGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33752 0.67 0.472383
Target:  5'- aCACCUgggcggcgcagcaGCCGCUGCacacagcgaGUacGG-CGCGGCCUg -3'
miRNA:   3'- -GUGGA-------------UGGCGAUG---------CA--CCaGUGCCGGG- -5'
26490 5' -57.4 NC_005357.1 + 33465 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33393 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33345 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33297 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33249 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 33201 0.67 0.463365
Target:  5'- gGCC-ACCGCUGgcuauCGcGG-CACGGCCa -3'
miRNA:   3'- gUGGaUGGCGAU-----GCaCCaGUGCCGGg -5'
26490 5' -57.4 NC_005357.1 + 32463 0.69 0.361244
Target:  5'- -cCCUACUGCcgAgGUGGggGCGGCCg -3'
miRNA:   3'- guGGAUGGCGa-UgCACCagUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.