Results 1 - 20 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 25730 | 1.11 | 0.000327 |
Target: 5'- aCACCUACCGCUACGUGGUCACGGCCCu -3' miRNA: 3'- -GUGGAUGGCGAUGCACCAGUGCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 16078 | 0.67 | 0.49376 |
Target: 5'- aAUCUGCCGaUACGagcGG-CGCGGCCa -3' miRNA: 3'- gUGGAUGGCgAUGCa--CCaGUGCCGGg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 6188 | 0.66 | 0.525035 |
Target: 5'- -uCUUGCCGCaGCGUuugcaGGUgACGGCgCg -3' miRNA: 3'- guGGAUGGCGaUGCA-----CCAgUGCCGgG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 36776 | 0.66 | 0.567826 |
Target: 5'- aCAgCUACCGCUGguuuccgcCGUG--UACGGCCa -3' miRNA: 3'- -GUgGAUGGCGAU--------GCACcaGUGCCGGg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 29042 | 0.71 | 0.262197 |
Target: 5'- cCGCCUacaACCGC-GCGcUGGgCAUGGCCUa -3' miRNA: 3'- -GUGGA---UGGCGaUGC-ACCaGUGCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 14728 | 0.7 | 0.31253 |
Target: 5'- gGCgaGCCGCUGCc-GGcgCGCGGCCUg -3' miRNA: 3'- gUGgaUGGCGAUGcaCCa-GUGCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 14250 | 0.7 | 0.344435 |
Target: 5'- gCACCUGCUGg-GCGUGGgcaACGGCg- -3' miRNA: 3'- -GUGGAUGGCgaUGCACCag-UGCCGgg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 4040 | 0.69 | 0.378615 |
Target: 5'- aGCCgGCCGCggcgaGCGgcaGGcCAgCGGCCCa -3' miRNA: 3'- gUGGaUGGCGa----UGCa--CCaGU-GCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 35830 | 0.68 | 0.424426 |
Target: 5'- aCGCCaUGCU-CUACGUGGUgC-CGGCCg -3' miRNA: 3'- -GUGG-AUGGcGAUGCACCA-GuGCCGGg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 22787 | 0.67 | 0.483524 |
Target: 5'- cCACCaACCcgacGCUGgcCGauGUCGCGGCCCg -3' miRNA: 3'- -GUGGaUGG----CGAU--GCacCAGUGCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 40206 | 0.68 | 0.443655 |
Target: 5'- cCGCCUGCUGC-GCGUGGU-GCuaCCCg -3' miRNA: 3'- -GUGGAUGGCGaUGCACCAgUGccGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 17346 | 0.68 | 0.424426 |
Target: 5'- gCGCCggGCgCGCUGCGcugGGUgGCGaugcuGCCCg -3' miRNA: 3'- -GUGGa-UG-GCGAUGCa--CCAgUGC-----CGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 25307 | 0.8 | 0.066081 |
Target: 5'- cCAUCUGCCGCaacuuCGUGGUCAagccccaaGGCCCg -3' miRNA: 3'- -GUGGAUGGCGau---GCACCAGUg-------CCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 17694 | 0.67 | 0.47339 |
Target: 5'- -gUCgagGCCGCgcagGCGcGGUggaaGCGGCCCg -3' miRNA: 3'- guGGa--UGGCGa---UGCaCCAg---UGCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 18137 | 0.77 | 0.120108 |
Target: 5'- gACCUcACCGCccccACGUGGUCACuGUCCg -3' miRNA: 3'- gUGGA-UGGCGa---UGCACCAGUGcCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 14191 | 0.68 | 0.405704 |
Target: 5'- aGCCUGgcgcaguccgacCCGC-GCGUGGUCGuCGGCg- -3' miRNA: 3'- gUGGAU------------GGCGaUGCACCAGU-GCCGgg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 18735 | 0.67 | 0.483524 |
Target: 5'- gGCgCUACCgGCcugUACGU-GUC-CGGCCCg -3' miRNA: 3'- gUG-GAUGG-CG---AUGCAcCAGuGCCGGG- -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 5317 | 0.66 | 0.514521 |
Target: 5'- gGCCguagGCCGCgagcACGUGGcgcagCAUGGCa- -3' miRNA: 3'- gUGGa---UGGCGa---UGCACCa----GUGCCGgg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 20663 | 0.72 | 0.236511 |
Target: 5'- gCACCgUGCCGggcggccugucCUAUGUGGaCGCGGCCg -3' miRNA: 3'- -GUGG-AUGGC-----------GAUGCACCaGUGCCGGg -5' |
|||||||
26490 | 5' | -57.4 | NC_005357.1 | + | 2069 | 0.7 | 0.320291 |
Target: 5'- gGCCUGuaGCUugacauCGUGGaCAuCGGCCCa -3' miRNA: 3'- gUGGAUggCGAu-----GCACCaGU-GCCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home