miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 38471 0.66 0.295
Target:  5'- -cUACCGCG-GCuaCGGUUUCCGCCGu -3'
miRNA:   3'- caGUGGCGCuCGc-GCCGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 28883 0.66 0.308851
Target:  5'- cUCGCUGCuGGCGUaguugcuGGCCgUCGCCGAc -3'
miRNA:   3'- cAGUGGCGcUCGCG-------CCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27659 0.66 0.317094
Target:  5'- -cUACCcagGUGGGCGCcaCCUCCACCGu -3'
miRNA:   3'- caGUGG---CGCUCGCGccGGAGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14307 0.66 0.317094
Target:  5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3'
miRNA:   3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 25617 0.66 0.317094
Target:  5'- -cCACgGCG-GCGCGGUCgccagcagcgcgUCCACCu- -3'
miRNA:   3'- caGUGgCGCuCGCGCCGG------------AGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 32345 0.66 0.317094
Target:  5'- -cCGCCGCccaggucGCuGCGGUCgCCGCCGAg -3'
miRNA:   3'- caGUGGCGcu-----CG-CGCCGGaGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 18533 0.66 0.280948
Target:  5'- --aGCCGCGGGCGUGGCgcacUUCCuuggcguauuCCGGg -3'
miRNA:   3'- cagUGGCGCUCGCGCCG----GAGGu---------GGCU- -5'
26496 3' -62.4 NC_005357.1 + 16725 0.66 0.31483
Target:  5'- -cCGCCGCGgggcugguaugagcAGCGuuGCCgaaaUCCGCCGGc -3'
miRNA:   3'- caGUGGCGC--------------UCGCgcCGG----AGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 18064 0.66 0.280948
Target:  5'- -cCGgCGCgGGGUGCGuGCUgggCCGCCGAa -3'
miRNA:   3'- caGUgGCG-CUCGCGC-CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 23338 0.66 0.302229
Target:  5'- --aGCCGCGcaauuCGaCGGCCUcgCCGCCGAu -3'
miRNA:   3'- cagUGGCGCuc---GC-GCCGGA--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 8578 0.66 0.302229
Target:  5'- cGUCguagGCCGCGcGUGCGGCCUgguGCUGGa -3'
miRNA:   3'- -CAG----UGGCGCuCGCGCCGGAgg-UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 33467 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 17067 0.66 0.297876
Target:  5'- uUCACCucGCGcacgaaggcgaagccGGCGCGGuUCUCgGCCGGg -3'
miRNA:   3'- cAGUGG--CGC---------------UCGCGCC-GGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 10343 0.66 0.302229
Target:  5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3'
miRNA:   3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5'
26496 3' -62.4 NC_005357.1 + 33203 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33251 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33299 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 28567 0.66 0.309594
Target:  5'- -cCAUCGCG-GCGCGcacGUCggCCACCGGc -3'
miRNA:   3'- caGUGGCGCuCGCGC---CGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 33347 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33395 0.66 0.302229
Target:  5'- -cCACCGCuGGCuaucGCGGCacggCCACCGc -3'
miRNA:   3'- caGUGGCGcUCG----CGCCGga--GGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.