miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 23862 1.08 0.000188
Target:  5'- cGUCACCGCGAGCGCGGCCUCCACCGAc -3'
miRNA:   3'- -CAGUGGCGCUCGCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24736 0.79 0.036619
Target:  5'- -cCACCGCGccuGCGCGGCCUCgACCc- -3'
miRNA:   3'- caGUGGCGCu--CGCGCCGGAGgUGGcu -5'
26496 3' -62.4 NC_005357.1 + 10878 0.77 0.047303
Target:  5'- gGUCGgCGCGAugcGCGCGGCguauucCUCCACCGGa -3'
miRNA:   3'- -CAGUgGCGCU---CGCGCCG------GAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 29863 0.74 0.078504
Target:  5'- aUCGCCGCGcAGCGCgaGGCCggcaagaaaUUCACCGAc -3'
miRNA:   3'- cAGUGGCGC-UCGCG--CCGG---------AGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 7342 0.73 0.09021
Target:  5'- aUgGCCuuGAGCGCGGCCUCgACCu- -3'
miRNA:   3'- cAgUGGcgCUCGCGCCGGAGgUGGcu -5'
26496 3' -62.4 NC_005357.1 + 21739 0.73 0.10075
Target:  5'- -cCACCGuUGGGCGCGGCCgcgUCCACauaGGa -3'
miRNA:   3'- caGUGGC-GCUCGCGCCGG---AGGUGg--CU- -5'
26496 3' -62.4 NC_005357.1 + 40420 0.73 0.103562
Target:  5'- uUCGCCaGCGAGCGCcugGGCCUcaagaucagCCACUGGc -3'
miRNA:   3'- cAGUGG-CGCUCGCG---CCGGA---------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 39874 0.7 0.151033
Target:  5'- --aGCCGgcaauuaCGAGCGCGGCCcCUACCGc -3'
miRNA:   3'- cagUGGC-------GCUCGCGCCGGaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 18462 0.7 0.164035
Target:  5'- gGUCGCgGCGccggcGGCGuCGGCCgauucgUCCACCGu -3'
miRNA:   3'- -CAGUGgCGC-----UCGC-GCCGG------AGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 33204 0.7 0.167994
Target:  5'- --uGCCGcCGGGCGCGccgcagaacgugcGCCgcgCCGCCGAg -3'
miRNA:   3'- cagUGGC-GCUCGCGC-------------CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27701 0.7 0.168439
Target:  5'- --gGCCGCGcgccGGCaGCGGCUcgCCGCCGGu -3'
miRNA:   3'- cagUGGCGC----UCG-CGCCGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 24435 0.7 0.168439
Target:  5'- uGUCgguGCCGC--GCGCGGCCUCggcgacauugaCGCCGAc -3'
miRNA:   3'- -CAG---UGGCGcuCGCGCCGGAG-----------GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 21153 0.69 0.182294
Target:  5'- cGUguCCGCGcccugguucaacAGCGCGGCCUgCugCGc -3'
miRNA:   3'- -CAguGGCGC------------UCGCGCCGGAgGugGCu -5'
26496 3' -62.4 NC_005357.1 + 384 0.69 0.187132
Target:  5'- --uGCCGauuGAGCGCGGCCagCGCgCGAc -3'
miRNA:   3'- cagUGGCg--CUCGCGCCGGagGUG-GCU- -5'
26496 3' -62.4 NC_005357.1 + 14590 0.69 0.192082
Target:  5'- --aGCaGCG-GCGCGGCCggcgCCACCGc -3'
miRNA:   3'- cagUGgCGCuCGCGCCGGa---GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14917 0.69 0.192082
Target:  5'- --gACCGCGccgagaAGCugGCGGCCgaggCCGCCGGc -3'
miRNA:   3'- cagUGGCGC------UCG--CGCCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 1303 0.69 0.197147
Target:  5'- -cCGCCGCGcccagGGCGaCGGCCaCCagGCCGAc -3'
miRNA:   3'- caGUGGCGC-----UCGC-GCCGGaGG--UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 17427 0.69 0.197147
Target:  5'- cGUCGCCcuUGAGCaGUGGCC-CCGCCa- -3'
miRNA:   3'- -CAGUGGc-GCUCG-CGCCGGaGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 17297 0.69 0.202329
Target:  5'- -gCGCCGCGGGCGCG-CaUCCAuuCCGGc -3'
miRNA:   3'- caGUGGCGCUCGCGCcGgAGGU--GGCU- -5'
26496 3' -62.4 NC_005357.1 + 12009 0.69 0.202329
Target:  5'- cGUCgGCCaGC-AGCGCGGCCguggCCGgCGAg -3'
miRNA:   3'- -CAG-UGG-CGcUCGCGCCGGa---GGUgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.