miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 384 0.69 0.187132
Target:  5'- --uGCCGauuGAGCGCGGCCagCGCgCGAc -3'
miRNA:   3'- cagUGGCg--CUCGCGCCGGagGUG-GCU- -5'
26496 3' -62.4 NC_005357.1 + 1303 0.69 0.197147
Target:  5'- -cCGCCGCGcccagGGCGaCGGCCaCCagGCCGAc -3'
miRNA:   3'- caGUGGCGC-----UCGC-GCCGGaGG--UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 1706 0.69 0.202329
Target:  5'- uUCGCCGUGGGC-CGGCgUgCCGgCGAg -3'
miRNA:   3'- cAGUGGCGCUCGcGCCGgA-GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 2944 0.66 0.302229
Target:  5'- -aCACCGCGucGCGCGGCa--CGUCGAg -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGgagGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 3875 0.68 0.230034
Target:  5'- cGUCGCUGUaGGccGCGCuGCCgucgCCGCCGAa -3'
miRNA:   3'- -CAGUGGCG-CU--CGCGcCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 5349 0.66 0.295
Target:  5'- -gCAUCGCGcuGCGUGGCCgCCugCa- -3'
miRNA:   3'- caGUGGCGCu-CGCGCCGGaGGugGcu -5'
26496 3' -62.4 NC_005357.1 + 6077 0.68 0.224248
Target:  5'- -aCACCGCcucgaagucgucGAGCGCGGCCUUgCGCa-- -3'
miRNA:   3'- caGUGGCG------------CUCGCGCCGGAG-GUGgcu -5'
26496 3' -62.4 NC_005357.1 + 7342 0.73 0.09021
Target:  5'- aUgGCCuuGAGCGCGGCCUCgACCu- -3'
miRNA:   3'- cAgUGGcgCUCGCGCCGGAGgUGGcu -5'
26496 3' -62.4 NC_005357.1 + 8578 0.66 0.302229
Target:  5'- cGUCguagGCCGCGcGUGCGGCCUgguGCUGGa -3'
miRNA:   3'- -CAG----UGGCGCuCGCGCCGGAgg-UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 8735 0.68 0.235946
Target:  5'- --uGCCcgGCGGGCGCGGCg-CUACCGu -3'
miRNA:   3'- cagUGG--CGCUCGCGCCGgaGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 8966 0.66 0.309594
Target:  5'- --uGCCGCGAuagccaGCGUGGCCgu-GCCGGa -3'
miRNA:   3'- cagUGGCGCU------CGCGCCGGaggUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 10343 0.66 0.302229
Target:  5'- cGUCGCUGCG-GCGUGuGCCUUCuucuCCc- -3'
miRNA:   3'- -CAGUGGCGCuCGCGC-CGGAGGu---GGcu -5'
26496 3' -62.4 NC_005357.1 + 10689 0.66 0.287907
Target:  5'- cGUCuugACgGC-AGCGCgcacGGCCUCgGCCGAu -3'
miRNA:   3'- -CAG---UGgCGcUCGCG----CCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 10878 0.77 0.047303
Target:  5'- gGUCGgCGCGAugcGCGCGGCguauucCUCCACCGGa -3'
miRNA:   3'- -CAGUgGCGCU---CGCGCCG------GAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 12009 0.69 0.202329
Target:  5'- cGUCgGCCaGC-AGCGCGGCCguggCCGgCGAg -3'
miRNA:   3'- -CAG-UGG-CGcUCGCGCCGGa---GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 13042 0.67 0.266771
Target:  5'- cGUCAUCGCguugcuuGAGUGCGGCCgUCUGCa-- -3'
miRNA:   3'- -CAGUGGCG-------CUCGCGCCGG-AGGUGgcu -5'
26496 3' -62.4 NC_005357.1 + 13759 0.67 0.241984
Target:  5'- -gCGCCGCGcuGGCGaGGCCgccggCACCGAu -3'
miRNA:   3'- caGUGGCGC--UCGCgCCGGag---GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14307 0.66 0.317094
Target:  5'- cGUCGuuGCugaacuGGCGCGcGCCUUgGCUGAa -3'
miRNA:   3'- -CAGUggCGc-----UCGCGC-CGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14335 0.67 0.274124
Target:  5'- aUCACCGCGAcggaauacgacGcCGCGGCCaccugcCCGCUGu -3'
miRNA:   3'- cAGUGGCGCU-----------C-GCGCCGGa-----GGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 14590 0.69 0.192082
Target:  5'- --aGCaGCG-GCGCGGCCggcgCCACCGc -3'
miRNA:   3'- cagUGgCGCuCGCGCCGGa---GGUGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.