miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 3' -62.4 NC_005357.1 + 10689 0.66 0.287907
Target:  5'- cGUCuugACgGC-AGCGCgcacGGCCUCgGCCGAu -3'
miRNA:   3'- -CAG---UGgCGcUCGCG----CCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 37792 0.69 0.202329
Target:  5'- aUgGCCGaCGcAGCGUGGCCcagcauccCCGCCGAc -3'
miRNA:   3'- cAgUGGC-GC-UCGCGCCGGa-------GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 19761 0.68 0.207628
Target:  5'- uGUUGCCGgccaCGAG-GCGGUCUUCACUGAu -3'
miRNA:   3'- -CAGUGGC----GCUCgCGCCGGAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 14901 0.68 0.218026
Target:  5'- gGUCugCGCG-GCGaucugcugcuggcCGGCCUCaaguGCCGAc -3'
miRNA:   3'- -CAGugGCGCuCGC-------------GCCGGAGg---UGGCU- -5'
26496 3' -62.4 NC_005357.1 + 3875 0.68 0.230034
Target:  5'- cGUCGCUGUaGGccGCGCuGCCgucgCCGCCGAa -3'
miRNA:   3'- -CAGUGGCG-CU--CGCGcCGGa---GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 23540 0.67 0.241984
Target:  5'- -gCGCaCGCGGuCGaUGGCCUCgGCCGAc -3'
miRNA:   3'- caGUG-GCGCUcGC-GCCGGAGgUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27486 0.67 0.248151
Target:  5'- -gCACCacGCGAGgaugccgGCGGCCUCgGCCGc -3'
miRNA:   3'- caGUGG--CGCUCg------CGCCGGAGgUGGCu -5'
26496 3' -62.4 NC_005357.1 + 13042 0.67 0.266771
Target:  5'- cGUCAUCGCguugcuuGAGUGCGGCCgUCUGCa-- -3'
miRNA:   3'- -CAGUGGCG-------CUCGCGCCGG-AGGUGgcu -5'
26496 3' -62.4 NC_005357.1 + 18064 0.66 0.280948
Target:  5'- -cCGgCGCgGGGUGCGuGCUgggCCGCCGAa -3'
miRNA:   3'- caGUgGCG-CUCGCGC-CGGa--GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 12009 0.69 0.202329
Target:  5'- cGUCgGCCaGC-AGCGCGGCCguggCCGgCGAg -3'
miRNA:   3'- -CAG-UGG-CGcUCGCGCCGGa---GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 1706 0.69 0.202329
Target:  5'- uUCGCCGUGGGC-CGGCgUgCCGgCGAg -3'
miRNA:   3'- cAGUGGCGCUCGcGCCGgA-GGUgGCU- -5'
26496 3' -62.4 NC_005357.1 + 17297 0.69 0.202329
Target:  5'- -gCGCCGCGGGCGCG-CaUCCAuuCCGGc -3'
miRNA:   3'- caGUGGCGCUCGCGCcGgAGGU--GGCU- -5'
26496 3' -62.4 NC_005357.1 + 10878 0.77 0.047303
Target:  5'- gGUCGgCGCGAugcGCGCGGCguauucCUCCACCGGa -3'
miRNA:   3'- -CAGUgGCGCU---CGCGCCG------GAGGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 21739 0.73 0.10075
Target:  5'- -cCACCGuUGGGCGCGGCCgcgUCCACauaGGa -3'
miRNA:   3'- caGUGGC-GCUCGCGCCGG---AGGUGg--CU- -5'
26496 3' -62.4 NC_005357.1 + 18462 0.7 0.164035
Target:  5'- gGUCGCgGCGccggcGGCGuCGGCCgauucgUCCACCGu -3'
miRNA:   3'- -CAGUGgCGC-----UCGC-GCCGG------AGGUGGCu -5'
26496 3' -62.4 NC_005357.1 + 24435 0.7 0.168439
Target:  5'- uGUCgguGCCGC--GCGCGGCCUCggcgacauugaCGCCGAc -3'
miRNA:   3'- -CAG---UGGCGcuCGCGCCGGAG-----------GUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 27701 0.7 0.168439
Target:  5'- --gGCCGCGcgccGGCaGCGGCUcgCCGCCGGu -3'
miRNA:   3'- cagUGGCGC----UCG-CGCCGGa-GGUGGCU- -5'
26496 3' -62.4 NC_005357.1 + 21153 0.69 0.182294
Target:  5'- cGUguCCGCGcccugguucaacAGCGCGGCCUgCugCGc -3'
miRNA:   3'- -CAguGGCGC------------UCGCGCCGGAgGugGCu -5'
26496 3' -62.4 NC_005357.1 + 17427 0.69 0.197147
Target:  5'- cGUCGCCcuUGAGCaGUGGCC-CCGCCa- -3'
miRNA:   3'- -CAGUGGc-GCUCG-CGCCGGaGGUGGcu -5'
26496 3' -62.4 NC_005357.1 + 1303 0.69 0.197147
Target:  5'- -cCGCCGCGcccagGGCGaCGGCCaCCagGCCGAc -3'
miRNA:   3'- caGUGGCGC-----UCGC-GCCGGaGG--UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.