miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 41769 0.66 0.598498
Target:  5'- --gCGGCCugguGGCUAcagCCUugGGCACCGa -3'
miRNA:   3'- gaaGCCGGu---CCGGUua-GGG--UUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 41219 0.67 0.511194
Target:  5'- -aUCGGCCaugaGGGCgGuuAUUCCAACAacCCGg -3'
miRNA:   3'- gaAGCCGG----UCCGgU--UAGGGUUGU--GGC- -5'
26496 5' -56.2 NC_005357.1 + 41116 0.67 0.54344
Target:  5'- -gUCGGCCugguGGCCGucgCCCuggGCGCgGc -3'
miRNA:   3'- gaAGCCGGu---CCGGUua-GGGu--UGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 40660 0.66 0.558719
Target:  5'- -aUCGGCCcgacgcgccaggcgcAGGCCGG--CCAugACCGc -3'
miRNA:   3'- gaAGCCGG---------------UCCGGUUagGGUugUGGC- -5'
26496 5' -56.2 NC_005357.1 + 38658 0.67 0.511194
Target:  5'- uUUCGGCacgaccgAGGCUAcgUCCAgcggcgGCACCGa -3'
miRNA:   3'- gAAGCCGg------UCCGGUuaGGGU------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 37622 0.68 0.44932
Target:  5'- --cCGGCCAG--CAAUCCCGcaGCGCCa -3'
miRNA:   3'- gaaGCCGGUCcgGUUAGGGU--UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 37224 0.69 0.401056
Target:  5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3'
miRNA:   3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 37175 0.69 0.410444
Target:  5'- --aCGGU--GGCCGGUgCCAACGCCa -3'
miRNA:   3'- gaaGCCGguCCGGUUAgGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 34802 0.68 0.459354
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 34741 0.68 0.47977
Target:  5'- --cCGGCCgccgAGGUCAAgCCCGACgACCu -3'
miRNA:   3'- gaaGCCGG----UCCGGUUaGGGUUG-UGGc -5'
26496 5' -56.2 NC_005357.1 + 33959 0.7 0.339304
Target:  5'- -gUCGGCugcggcaucgCAGGCCAc-CUCGACGCCGa -3'
miRNA:   3'- gaAGCCG----------GUCCGGUuaGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33733 0.69 0.429624
Target:  5'- --cCGaCCcGGCCAGUacaCCAACGCCGa -3'
miRNA:   3'- gaaGCcGGuCCGGUUAg--GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33640 0.66 0.587392
Target:  5'- --cCGGCgC-GGCCGA-CCCAucguGCGCCGc -3'
miRNA:   3'- gaaGCCG-GuCCGGUUaGGGU----UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33345 0.73 0.237358
Target:  5'- --aCGGCCucgcGGCCAGUgaggggaugcacCCCGAUACCGu -3'
miRNA:   3'- gaaGCCGGu---CCGGUUA------------GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 32937 0.73 0.225088
Target:  5'- gUUCGGCCAGGgCGA-CCaCGGCugCGu -3'
miRNA:   3'- gAAGCCGGUCCgGUUaGG-GUUGugGC- -5'
26496 5' -56.2 NC_005357.1 + 32570 0.67 0.511194
Target:  5'- --gCGcGCCGGuGCCAcgCUCAucgACGCCGa -3'
miRNA:   3'- gaaGC-CGGUC-CGGUuaGGGU---UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 32314 0.69 0.429624
Target:  5'- -aUCGccGCCAucaaGGCCGgcGUCCCGACAaCCGc -3'
miRNA:   3'- gaAGC--CGGU----CCGGU--UAGGGUUGU-GGC- -5'
26496 5' -56.2 NC_005357.1 + 31145 0.75 0.16691
Target:  5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3'
miRNA:   3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 30586 0.68 0.44932
Target:  5'- gUUCGcCCAGGCCAA-CCgCGGCgcgGCCGg -3'
miRNA:   3'- gAAGCcGGUCCGGUUaGG-GUUG---UGGC- -5'
26496 5' -56.2 NC_005357.1 + 29584 0.68 0.476679
Target:  5'- -gUCGGCCgcgcccaggcgcgcGGuuuGCCAGUugUCCAGCGCCGg -3'
miRNA:   3'- gaAGCCGG--------------UC---CGGUUA--GGGUUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.