miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26501 5' -51.5 NC_005357.1 + 5069 0.66 0.846034
Target:  5'- aGGCcGCGGCAGGUuuUGCGguuGGAAcaggcGGCCg -3'
miRNA:   3'- -CCGcCGCUGUUCG--ACGU---UCUU-----UUGGa -5'
26501 5' -51.5 NC_005357.1 + 38188 0.66 0.846034
Target:  5'- -aCGGCGGgAAGCUGgcAGAAAACg- -3'
miRNA:   3'- ccGCCGCUgUUCGACguUCUUUUGga -5'
26501 5' -51.5 NC_005357.1 + 38811 0.66 0.846034
Target:  5'- cGGCGGCGugAauGGC-GCAuccGAAuacacGGCCa -3'
miRNA:   3'- -CCGCCGCugU--UCGaCGUu--CUU-----UUGGa -5'
26501 5' -51.5 NC_005357.1 + 41978 0.66 0.836824
Target:  5'- uGGUGcGCGGCGAGCagaaggacaGCAcuAAGACCa -3'
miRNA:   3'- -CCGC-CGCUGUUCGa--------CGUucUUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 24662 0.66 0.836824
Target:  5'- cGCGcGCGACucGCUGCucGAAcugcacACCUg -3'
miRNA:   3'- cCGC-CGCUGuuCGACGuuCUUu-----UGGA- -5'
26501 5' -51.5 NC_005357.1 + 15151 0.66 0.836824
Target:  5'- aGGCGcGCGGCGAaCUGCGguucauugccucGGccaAGAGCCUg -3'
miRNA:   3'- -CCGC-CGCUGUUcGACGU------------UC---UUUUGGA- -5'
26501 5' -51.5 NC_005357.1 + 15919 0.66 0.834015
Target:  5'- uGGCGGUGaaugaugccggcuuGCGAGUcgGCGAGGAucACCc -3'
miRNA:   3'- -CCGCCGC--------------UGUUCGa-CGUUCUUu-UGGa -5'
26501 5' -51.5 NC_005357.1 + 33758 0.66 0.827376
Target:  5'- gGGCGGCGcaGCAGccGCUGCAcacagcgaguacGGcgcGGCCUg -3'
miRNA:   3'- -CCGCCGC--UGUU--CGACGU------------UCuu-UUGGA- -5'
26501 5' -51.5 NC_005357.1 + 16578 0.66 0.827376
Target:  5'- -aCGGCGACAAGaccaGCAuGGAAcuGACCg -3'
miRNA:   3'- ccGCCGCUGUUCga--CGU-UCUU--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 41259 0.66 0.827376
Target:  5'- -cCGGCGGCGAGacuaUGUggGGcguGACCg -3'
miRNA:   3'- ccGCCGCUGUUCg---ACGuuCUu--UUGGa -5'
26501 5' -51.5 NC_005357.1 + 32940 0.66 0.827376
Target:  5'- cGGCcagGGCGACcacGGCUGCGucgauuacuGGcAAGACCc -3'
miRNA:   3'- -CCG---CCGCUGu--UCGACGU---------UC-UUUUGGa -5'
26501 5' -51.5 NC_005357.1 + 16908 0.66 0.826419
Target:  5'- cGGCGGCGGCAAaaccgaccucaucGCggGCcuGAcccuGACCa -3'
miRNA:   3'- -CCGCCGCUGUU-------------CGa-CGuuCUu---UUGGa -5'
26501 5' -51.5 NC_005357.1 + 7739 0.66 0.8177
Target:  5'- cGGCGGcCGGCuuGCUGUuggcgacgAAGGAAuCCa -3'
miRNA:   3'- -CCGCC-GCUGuuCGACG--------UUCUUUuGGa -5'
26501 5' -51.5 NC_005357.1 + 7394 0.66 0.814754
Target:  5'- cGCGGCGACcuuccaccagcuugAAGCcggGCAccGGAugGCCg -3'
miRNA:   3'- cCGCCGCUG--------------UUCGa--CGU--UCUuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 1724 0.66 0.797708
Target:  5'- cGGUGGCGACAAugUGguAGAugaacACCg -3'
miRNA:   3'- -CCGCCGCUGUUcgACguUCUuu---UGGa -5'
26501 5' -51.5 NC_005357.1 + 7685 0.66 0.797708
Target:  5'- uGGCGGCGAUcuGCgGCcGGu-AGCCc -3'
miRNA:   3'- -CCGCCGCUGuuCGaCGuUCuuUUGGa -5'
26501 5' -51.5 NC_005357.1 + 31836 0.67 0.787418
Target:  5'- uGCGGUG-CAGGCUGCGc----GCCUg -3'
miRNA:   3'- cCGCCGCuGUUCGACGUucuuuUGGA- -5'
26501 5' -51.5 NC_005357.1 + 35029 0.67 0.787418
Target:  5'- -cCGGCuuCAAGCUGguGGAAGgucGCCg -3'
miRNA:   3'- ccGCCGcuGUUCGACguUCUUU---UGGa -5'
26501 5' -51.5 NC_005357.1 + 27441 0.67 0.787418
Target:  5'- cGGCGGCcGCAGGCccugGCGcuGGuauGCCa -3'
miRNA:   3'- -CCGCCGcUGUUCGa---CGU--UCuuuUGGa -5'
26501 5' -51.5 NC_005357.1 + 4825 0.67 0.776948
Target:  5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3'
miRNA:   3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.