miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26502 5' -57.9 NC_005357.1 + 2100 0.65 0.495619
Target:  5'- cAGGUGguCGCCGUGUCGucgguauagauuGCGccGUUGGCg -3'
miRNA:   3'- -UCCGC--GCGGUACGGCu-----------CGUu-CAACCG- -5'
26502 5' -57.9 NC_005357.1 + 14822 0.66 0.487292
Target:  5'- cGGCGCuGCCuucgcccagGUCGAuGCc-GUUGGCg -3'
miRNA:   3'- uCCGCG-CGGua-------CGGCU-CGuuCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 790 0.66 0.487292
Target:  5'- cGGGCcgcuGCGCaaucGCCGucAGCAGGUggcugGGCu -3'
miRNA:   3'- -UCCG----CGCGgua-CGGC--UCGUUCAa----CCG- -5'
26502 5' -57.9 NC_005357.1 + 1085 0.66 0.487292
Target:  5'- cGGCGCGCguacuuCAUGuuG-GCGgcGGUaGGCg -3'
miRNA:   3'- uCCGCGCG------GUACggCuCGU--UCAaCCG- -5'
26502 5' -57.9 NC_005357.1 + 5121 0.66 0.486256
Target:  5'- cGGCugGCGCCguugaacugcaacGUGCCGcGCAGGc-GGCc -3'
miRNA:   3'- uCCG--CGCGG-------------UACGGCuCGUUCaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 24642 0.66 0.476977
Target:  5'- uGGCGUGCCG-GCgGGcCAGGaUGGUg -3'
miRNA:   3'- uCCGCGCGGUaCGgCUcGUUCaACCG- -5'
26502 5' -57.9 NC_005357.1 + 28299 0.66 0.476977
Target:  5'- aAGGCaaGCCGcugGCCGA-CGAGUacGGCg -3'
miRNA:   3'- -UCCGcgCGGUa--CGGCUcGUUCAa-CCG- -5'
26502 5' -57.9 NC_005357.1 + 2555 0.66 0.47084
Target:  5'- gGGGcCGCGCUcguaauUGCCGGcuuugaguucagcuuGCAaggccagcaGGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGu-----ACGGCU---------------CGU---------UCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 18065 0.66 0.466771
Target:  5'- cGGCGCGgggugCGUGCUGGGCcgccgAAGccGGCg -3'
miRNA:   3'- uCCGCGCg----GUACGGCUCG-----UUCaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 4168 0.66 0.466771
Target:  5'- -uGCGCGCCGUgGUCGAgguguaGCcAGUgGGCg -3'
miRNA:   3'- ucCGCGCGGUA-CGGCU------CGuUCAaCCG- -5'
26502 5' -57.9 NC_005357.1 + 35192 0.66 0.463731
Target:  5'- cGGCccGCGCCAgugGCCGAaguuGCAgggcuucaucacgcAGUccgaUGGCa -3'
miRNA:   3'- uCCG--CGCGGUa--CGGCU----CGU--------------UCA----ACCG- -5'
26502 5' -57.9 NC_005357.1 + 28689 0.66 0.46272
Target:  5'- cGGCGCGCCAcgucguucacaagGUCGAuGCu-GUcGGCg -3'
miRNA:   3'- uCCGCGCGGUa------------CGGCU-CGuuCAaCCG- -5'
26502 5' -57.9 NC_005357.1 + 33121 0.66 0.456679
Target:  5'- cGuGCGcCGCCAggucGCCGAGgAAGUcaaUGcGCa -3'
miRNA:   3'- uC-CGC-GCGGUa---CGGCUCgUUCA---AC-CG- -5'
26502 5' -57.9 NC_005357.1 + 33420 0.66 0.450681
Target:  5'- uGGUGCGCCGccUGCUGgaagcgcccccgcgcGGCGAGgaaaucgaGGCg -3'
miRNA:   3'- uCCGCGCGGU--ACGGC---------------UCGUUCaa------CCG- -5'
26502 5' -57.9 NC_005357.1 + 4683 0.66 0.450681
Target:  5'- -aGCGCGCCGgaUagcgcggcgagaaugGCCG-GCAAGUuguUGGCu -3'
miRNA:   3'- ucCGCGCGGU--A---------------CGGCuCGUUCA---ACCG- -5'
26502 5' -57.9 NC_005357.1 + 4539 0.66 0.447698
Target:  5'- uGGGCG-GUCGUGCCGccgcggaacuggacuGCGguacucauauGGUUGGCu -3'
miRNA:   3'- -UCCGCgCGGUACGGCu--------------CGU----------UCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 190 0.66 0.446706
Target:  5'- uGGGCacCGUCAcgcUGCCGGGCGAcacGGCg -3'
miRNA:   3'- -UCCGc-GCGGU---ACGGCUCGUUcaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 21389 0.66 0.446706
Target:  5'- uGGCGCGCUggGCCuGcGCGAGcaUGGa -3'
miRNA:   3'- uCCGCGCGGuaCGG-CuCGUUCa-ACCg -5'
26502 5' -57.9 NC_005357.1 + 27620 0.66 0.446706
Target:  5'- aAGGCaGCGCC--GCCGAgguGCAGGUUuccaGCg -3'
miRNA:   3'- -UCCG-CGCGGuaCGGCU---CGUUCAAc---CG- -5'
26502 5' -57.9 NC_005357.1 + 41742 0.66 0.445716
Target:  5'- uGGGCG-GCCcgGCCG-GCGccgccguAGgcGGCc -3'
miRNA:   3'- -UCCGCgCGGuaCGGCuCGU-------UCaaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.