miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 95352 0.66 0.780066
Target:  5'- aGAGCGCCUCACaCGaugaCCCAUCCa-- -3'
miRNA:   3'- gUUUGUGGGGUG-GCgg--GGGUAGGcgg -5'
2651 5' -59.8 NC_001491.2 + 4474 0.66 0.780066
Target:  5'- --uGCugCugCCGCCGCCCCgGUa-GCCu -3'
miRNA:   3'- guuUGugG--GGUGGCGGGGgUAggCGG- -5'
2651 5' -59.8 NC_001491.2 + 33246 0.66 0.780066
Target:  5'- --cACACgCgGCCGCCUCgGUggccaugagCCGCCg -3'
miRNA:   3'- guuUGUGgGgUGGCGGGGgUA---------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 126837 0.66 0.780066
Target:  5'- gCAucCACUCCACgGCCCacgCUGUCUGCa -3'
miRNA:   3'- -GUuuGUGGGGUGgCGGG---GGUAGGCGg -5'
2651 5' -59.8 NC_001491.2 + 128200 0.66 0.780066
Target:  5'- gGAACACCCUcuguguuuGuuGCCCCaaccguGUCCGUUu -3'
miRNA:   3'- gUUUGUGGGG--------UggCGGGGg-----UAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 5900 0.66 0.780066
Target:  5'- uCAGAUAUCCaggcuuCCGCgCCgAgcUCCGCCg -3'
miRNA:   3'- -GUUUGUGGGgu----GGCGgGGgU--AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 89545 0.66 0.780066
Target:  5'- aAGGCGuCCCCcaacucGCCGgCCCCGU-CGUCg -3'
miRNA:   3'- gUUUGU-GGGG------UGGCgGGGGUAgGCGG- -5'
2651 5' -59.8 NC_001491.2 + 36180 0.66 0.771003
Target:  5'- ----aACCCCGCC-CCgCCC-UCUGCUg -3'
miRNA:   3'- guuugUGGGGUGGcGG-GGGuAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 7291 0.66 0.771003
Target:  5'- --cACACCCC----CCCCCAUgccCCGCCc -3'
miRNA:   3'- guuUGUGGGGuggcGGGGGUA---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 146078 0.66 0.761823
Target:  5'- gCAAACGCgCCUACaCGCCUuuuUCAUCgGCg -3'
miRNA:   3'- -GUUUGUG-GGGUG-GCGGG---GGUAGgCGg -5'
2651 5' -59.8 NC_001491.2 + 5223 0.66 0.7609
Target:  5'- --cGCGuCCCCACCGCCgggugaugaggagCCCGUggcCCGgCg -3'
miRNA:   3'- guuUGU-GGGGUGGCGG-------------GGGUA---GGCgG- -5'
2651 5' -59.8 NC_001491.2 + 37124 0.66 0.752535
Target:  5'- cCGGACuccuCCCCuuCCGCUUCCGgccaCGCCc -3'
miRNA:   3'- -GUUUGu---GGGGu-GGCGGGGGUag--GCGG- -5'
2651 5' -59.8 NC_001491.2 + 33368 0.66 0.752535
Target:  5'- cCGGACucaCUCGCCGCCguggccggcuaCCCGgcccaggCCGCCg -3'
miRNA:   3'- -GUUUGug-GGGUGGCGG-----------GGGUa------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 32353 0.66 0.752535
Target:  5'- gGGAuCGCCCgGCCGCuggggccgccaCCCCGaagagCUGCCg -3'
miRNA:   3'- gUUU-GUGGGgUGGCG-----------GGGGUa----GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 5988 0.66 0.743147
Target:  5'- gUAAGUAuCCCCACCGCgCUUCGaCCGCUa -3'
miRNA:   3'- -GUUUGU-GGGGUGGCG-GGGGUaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 1365 0.66 0.743147
Target:  5'- gCAGGCacaGCUCCGUgGCCCCCAUgUGCa -3'
miRNA:   3'- -GUUUG---UGGGGUGgCGGGGGUAgGCGg -5'
2651 5' -59.8 NC_001491.2 + 4009 0.66 0.743147
Target:  5'- -cAGgGCCCagaGCgCGUUCCCggCCGCCa -3'
miRNA:   3'- guUUgUGGGg--UG-GCGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 31716 0.66 0.733668
Target:  5'- ---cCAgCCCGCCGCgCCCGaCCuGCUg -3'
miRNA:   3'- guuuGUgGGGUGGCGgGGGUaGG-CGG- -5'
2651 5' -59.8 NC_001491.2 + 138847 0.66 0.733668
Target:  5'- aAGGCGCCCCAaaGCCCCguaCUGUg -3'
miRNA:   3'- gUUUGUGGGGUggCGGGGguaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 99381 0.66 0.733668
Target:  5'- uGAACGCCCCgagugcugacACgGCUCCUA-CgGCCa -3'
miRNA:   3'- gUUUGUGGGG----------UGgCGGGGGUaGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.