miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26511 3' -53 NC_005357.1 + 42029 0.67 0.703736
Target:  5'- cCGCcguGCUGCUGgUgggCGCcCUGGGc -3'
miRNA:   3'- cGCGuu-UGACGACgAaa-GCGcGACCC- -5'
26511 3' -53 NC_005357.1 + 42021 0.71 0.458791
Target:  5'- cCGCGAcgUGCUGCUcaacagucgCGCGCUGGc -3'
miRNA:   3'- cGCGUUugACGACGAaa-------GCGCGACCc -5'
26511 3' -53 NC_005357.1 + 39851 0.7 0.511874
Target:  5'- gGCgGCAAGC-GC-GCgcaCGCGCUGGGc -3'
miRNA:   3'- -CG-CGUUUGaCGaCGaaaGCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 36679 0.78 0.186862
Target:  5'- gGCGC--ACUcGCUGCccggCGCGCUGGGc -3'
miRNA:   3'- -CGCGuuUGA-CGACGaaa-GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 36460 0.7 0.490311
Target:  5'- gGUGUu-GCUGuUUGCUUaCGCGCUGGa -3'
miRNA:   3'- -CGCGuuUGAC-GACGAAaGCGCGACCc -5'
26511 3' -53 NC_005357.1 + 36245 0.71 0.449547
Target:  5'- cUGCAAAC-GCUGCggcaagaccggccUGCGCUGGGa -3'
miRNA:   3'- cGCGUUUGaCGACGaaa----------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 35217 0.71 0.479689
Target:  5'- gGCGCAGA-UGCUGCcguggacaUCGCGCUGu- -3'
miRNA:   3'- -CGCGUUUgACGACGaa------AGCGCGACcc -5'
26511 3' -53 NC_005357.1 + 32618 0.69 0.557209
Target:  5'- uGCGCAAAC-GCUGCUUgacugguucggcgugCGCGacCUGGc -3'
miRNA:   3'- -CGCGUUUGaCGACGAAa--------------GCGC--GACCc -5'
26511 3' -53 NC_005357.1 + 31839 0.67 0.692498
Target:  5'- gGUGCAGGCUGCg-----CGC-CUGGGu -3'
miRNA:   3'- -CGCGUUUGACGacgaaaGCGcGACCC- -5'
26511 3' -53 NC_005357.1 + 31005 0.66 0.755334
Target:  5'- cGCGCGAcCUGUccacggGCUUgccggccgaggcaaUCGCGC-GGGc -3'
miRNA:   3'- -CGCGUUuGACGa-----CGAA--------------AGCGCGaCCC- -5'
26511 3' -53 NC_005357.1 + 29031 0.66 0.769133
Target:  5'- cCGCAAcgaUGCcGCcuacaaccgCGCGCUGGGc -3'
miRNA:   3'- cGCGUUug-ACGaCGaaa------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 28657 0.7 0.511874
Target:  5'- cGCGCAcaaGAUUGC-GCUcaugUCgGCGCUGGa -3'
miRNA:   3'- -CGCGU---UUGACGaCGAa---AG-CGCGACCc -5'
26511 3' -53 NC_005357.1 + 28251 0.7 0.505362
Target:  5'- uGCGcCAGGCucaccaUGUUGCgcaccaugaccgCGCGCUGGGa -3'
miRNA:   3'- -CGC-GUUUG------ACGACGaaa---------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 25613 0.67 0.714899
Target:  5'- cGCGUGAACUGC-GC---CGC-CUGGGc -3'
miRNA:   3'- -CGCGUUUGACGaCGaaaGCGcGACCC- -5'
26511 3' -53 NC_005357.1 + 25253 0.7 0.511874
Target:  5'- aGCGCAc-CUGUUGC--UCGCGCUGc- -3'
miRNA:   3'- -CGCGUuuGACGACGaaAGCGCGACcc -5'
26511 3' -53 NC_005357.1 + 23012 0.67 0.692498
Target:  5'- -gGCcuGCUGCUGCgccUGCuGUUGGGc -3'
miRNA:   3'- cgCGuuUGACGACGaaaGCG-CGACCC- -5'
26511 3' -53 NC_005357.1 + 22855 0.67 0.692498
Target:  5'- aGCGCGcGCUGCgaauuggGCUgcuucuggUUCGCGC-GGu -3'
miRNA:   3'- -CGCGUuUGACGa------CGA--------AAGCGCGaCCc -5'
26511 3' -53 NC_005357.1 + 21187 0.74 0.319661
Target:  5'- uGCGCGGcCUGCUGCUggucugCGCGUUGc- -3'
miRNA:   3'- -CGCGUUuGACGACGAaa----GCGCGACcc -5'
26511 3' -53 NC_005357.1 + 20482 0.66 0.769133
Target:  5'- cGCGC--ACUG-UGCc--CGCGUUGGGc -3'
miRNA:   3'- -CGCGuuUGACgACGaaaGCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 20298 0.67 0.669846
Target:  5'- cGUGCAAAgcCUGUUcgaccGCgg-CGCGCUGGa -3'
miRNA:   3'- -CGCGUUU--GACGA-----CGaaaGCGCGACCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.