miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2652 5' -64.7 NC_001491.2 + 84768 0.65 0.547252
Target:  5'- cGGGCagugccaAGGUCguaGCCGCUucuaccGCCC-CGCa -3'
miRNA:   3'- aCCCG-------UCCAGgg-CGGCGG------UGGGuGCG- -5'
2652 5' -64.7 NC_001491.2 + 1363 0.66 0.538793
Target:  5'- -cGGCAGGcacagCuCCGUgGCC-CCCAUGUg -3'
miRNA:   3'- acCCGUCCa----G-GGCGgCGGuGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 39445 0.66 0.527584
Target:  5'- --cGCGGGcCCCaGUCGCCugggugcuggccCCCGCGCa -3'
miRNA:   3'- accCGUCCaGGG-CGGCGGu-----------GGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 5181 0.66 0.523867
Target:  5'- cGGGCAGGUCUcgguauCGCUgucgagggcgaccggGUCGgCCGCGUc -3'
miRNA:   3'- aCCCGUCCAGG------GCGG---------------CGGUgGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 147716 0.66 0.52016
Target:  5'- -uGGCAGGguccggCCCGCgucaGCC-CCUACGg -3'
miRNA:   3'- acCCGUCCa-----GGGCGg---CGGuGGGUGCg -5'
2652 5' -64.7 NC_001491.2 + 32336 0.66 0.52016
Target:  5'- cGGGCcguccuccggaGGGgaucgCCCggccgcugggGCCGCCACCC-CGa -3'
miRNA:   3'- aCCCG-----------UCCa----GGG----------CGGCGGUGGGuGCg -5'
2652 5' -64.7 NC_001491.2 + 33638 0.66 0.52016
Target:  5'- cGcGGCGGGgcgUCCGCCGUC-CCCGg-- -3'
miRNA:   3'- aC-CCGUCCa--GGGCGGCGGuGGGUgcg -5'
2652 5' -64.7 NC_001491.2 + 90093 0.66 0.52016
Target:  5'- aGGGCccugAGaGccgcUUCCGCCGCCGCgCGcCGCu -3'
miRNA:   3'- aCCCG----UC-C----AGGGCGGCGGUGgGU-GCG- -5'
2652 5' -64.7 NC_001491.2 + 105268 0.66 0.519234
Target:  5'- cGGGCGuauguacGGacgCCCGCCGCgCACCUgugauggaaGCGa -3'
miRNA:   3'- aCCCGU-------CCa--GGGCGGCG-GUGGG---------UGCg -5'
2652 5' -64.7 NC_001491.2 + 144489 0.66 0.510938
Target:  5'- gGGcGCAGaaaCCGCCGUCgACCCuucagGCGCa -3'
miRNA:   3'- aCC-CGUCcagGGCGGCGG-UGGG-----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 33355 0.66 0.510938
Target:  5'- cGaGGCGGGgaggccggacucaCUCGCCGCCguggccggcuacccgGCCCAgGCc -3'
miRNA:   3'- aC-CCGUCCa------------GGGCGGCGG---------------UGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 26758 0.66 0.501784
Target:  5'- cGGGCucGGcgCCCGCCauguugaguagcGCgGCCCaguaGCGCu -3'
miRNA:   3'- aCCCGu-CCa-GGGCGG------------CGgUGGG----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 33917 0.66 0.501784
Target:  5'- cGGGCcucGG-CCUGgaCGUCACCCAgGCc -3'
miRNA:   3'- aCCCGu--CCaGGGCg-GCGGUGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 90299 0.66 0.4918
Target:  5'- aUGGGUGGGgucacacagcUCCggggguaccacuaUGCCGCUGCCCACa- -3'
miRNA:   3'- -ACCCGUCC----------AGG-------------GCGGCGGUGGGUGcg -5'
2652 5' -64.7 NC_001491.2 + 64460 0.66 0.4918
Target:  5'- aGGuuucGCAGGUCCCGUagugcuuucgUGCCacuagggagaucgGCCUGCGCc -3'
miRNA:   3'- aCC----CGUCCAGGGCG----------GCGG-------------UGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 3311 0.67 0.474775
Target:  5'- cUGGGUgacGGUCCagGCCGagGCCCGgGCc -3'
miRNA:   3'- -ACCCGu--CCAGGg-CGGCggUGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 4389 0.67 0.465934
Target:  5'- cGGGCcagGGGUCCCcggacggggugaGaaGCgGCUCGCGCu -3'
miRNA:   3'- aCCCG---UCCAGGG------------CggCGgUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 31870 0.67 0.465934
Target:  5'- aGcGGC-GGUCCUccuaccccggcgGCUGCCGCCCA-GCc -3'
miRNA:   3'- aC-CCGuCCAGGG------------CGGCGGUGGGUgCG- -5'
2652 5' -64.7 NC_001491.2 + 12550 0.67 0.457178
Target:  5'- cGGGCGcGGgagCgCGCgagCGCCGCCUcgggGCGCg -3'
miRNA:   3'- aCCCGU-CCa--GgGCG---GCGGUGGG----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 42782 0.67 0.448512
Target:  5'- aGGGCucGUCUucaUGCUGUggggCGCCCACGCc -3'
miRNA:   3'- aCCCGucCAGG---GCGGCG----GUGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.