Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26535 | 5' | -58.6 | NC_005357.1 | + | 8413 | 0.66 | 0.460541 |
Target: 5'- gGGCAGCGagcaGUUCGcggGGGCGuCGCGGa-- -3' miRNA: 3'- gCCGUUGC----CAAGC---UCCGC-GUGCCgua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 38549 | 0.66 | 0.460541 |
Target: 5'- gCGGCGACGGcagCGcGGCcuacaGCgACGGCGc -3' miRNA: 3'- -GCCGUUGCCaa-GCuCCG-----CG-UGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 16292 | 0.66 | 0.450613 |
Target: 5'- aGGCuaccCGGUcgUCGucGCGCACGGgAa -3' miRNA: 3'- gCCGuu--GCCA--AGCucCGCGUGCCgUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 41218 | 0.66 | 0.450613 |
Target: 5'- -aGCAAUGGgUCGAaaaGGCG-ACGGCGUa -3' miRNA: 3'- gcCGUUGCCaAGCU---CCGCgUGCCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 31206 | 0.66 | 0.450613 |
Target: 5'- gGGCGuggGCGGgaaCGuGGCggucauGCGCGGCAUu -3' miRNA: 3'- gCCGU---UGCCaa-GCuCCG------CGUGCCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 24563 | 0.66 | 0.440803 |
Target: 5'- gCGGCGAUGG--CGAGGCcggcCACGGUc- -3' miRNA: 3'- -GCCGUUGCCaaGCUCCGc---GUGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 6598 | 0.66 | 0.440803 |
Target: 5'- gGGCuGCGGUcuuugUCGAugaccagcgGGCGCGUGGCGc -3' miRNA: 3'- gCCGuUGCCA-----AGCU---------CCGCGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 18523 | 0.66 | 0.440803 |
Target: 5'- cCGGCAuggaagccGCGGg-CGuGGCGCACuuccuuGGCGUa -3' miRNA: 3'- -GCCGU--------UGCCaaGCuCCGCGUG------CCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 6875 | 0.66 | 0.440803 |
Target: 5'- uGGCcucgaacagAACGGggaaagCGAGGCGCACGuuGUu -3' miRNA: 3'- gCCG---------UUGCCaa----GCUCCGCGUGCcgUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 41960 | 0.66 | 0.431115 |
Target: 5'- uGGCGAUuGUcgaagCGGuGGUGCGCGGCGa -3' miRNA: 3'- gCCGUUGcCAa----GCU-CCGCGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 35935 | 0.66 | 0.431115 |
Target: 5'- aCGGCaAGCGcGUgaaugCG-GGCcuGCGCGGCGUg -3' miRNA: 3'- -GCCG-UUGC-CAa----GCuCCG--CGUGCCGUA- -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 13418 | 0.66 | 0.431115 |
Target: 5'- gCGGUAACGGUUCucGuCcCACGGCAg -3' miRNA: 3'- -GCCGUUGCCAAGcuCcGcGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 32701 | 0.66 | 0.431115 |
Target: 5'- aCGaGCAguucgcccGCGGcUUCGAGGCGUAUcucuucgagGGCAa -3' miRNA: 3'- -GC-CGU--------UGCC-AAGCUCCGCGUG---------CCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 9943 | 0.66 | 0.421554 |
Target: 5'- uCGGCcuUGGaUUCG-GGCGCAuCGGCc- -3' miRNA: 3'- -GCCGuuGCC-AAGCuCCGCGU-GCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 5475 | 0.67 | 0.412121 |
Target: 5'- gCGGCGAgGuGUUgccgaUGGGGgGUACGGCGa -3' miRNA: 3'- -GCCGUUgC-CAA-----GCUCCgCGUGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 26598 | 0.67 | 0.412121 |
Target: 5'- aCGGaCGGCGuGUUCGAGuccUGCGCGGUg- -3' miRNA: 3'- -GCC-GUUGC-CAAGCUCc--GCGUGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 13083 | 0.67 | 0.40282 |
Target: 5'- cCGGCgcgUGGUUCGAGGacuugGC-CGGCGa -3' miRNA: 3'- -GCCGuu-GCCAAGCUCCg----CGuGCCGUa -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 7622 | 0.67 | 0.40282 |
Target: 5'- uGGUGAUGG-UCaGGGgGCGCGGCu- -3' miRNA: 3'- gCCGUUGCCaAGcUCCgCGUGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 22071 | 0.67 | 0.393653 |
Target: 5'- gGGUcGCGGUc---GGCGCGCGGCu- -3' miRNA: 3'- gCCGuUGCCAagcuCCGCGUGCCGua -5' |
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26535 | 5' | -58.6 | NC_005357.1 | + | 18456 | 0.67 | 0.393653 |
Target: 5'- -cGUGACGG-UCGcGGCGCcgGCGGCGUc -3' miRNA: 3'- gcCGUUGCCaAGCuCCGCG--UGCCGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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