miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 3' -62.2 NC_005357.1 + 21257 0.78 0.043091
Target:  5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3'
miRNA:   3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 5334 0.67 0.276763
Target:  5'- aCGUgGCGCAGCAuGGCauCGcgCUGCguGGc -3'
miRNA:   3'- -GCAgCGCGUCGU-CCG--GCa-GGCGguCC- -5'
26538 3' -62.2 NC_005357.1 + 14971 0.66 0.312319
Target:  5'- gCGgCGCGCuGGCauaccagcgccaGGGCCugcggCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG-UCG------------UCCGGca---GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 29864 0.66 0.340794
Target:  5'- uCGcCGCGCAGCgcgAGGCCGgCaagaaauucaccgaCGCCgAGGu -3'
miRNA:   3'- -GCaGCGCGUCG---UCCGGCaG--------------GCGG-UCC- -5'
26538 3' -62.2 NC_005357.1 + 8409 0.7 0.184528
Target:  5'- uGUCGgGCAGCGaGCaGUUCGCgGGGg -3'
miRNA:   3'- gCAGCgCGUCGUcCGgCAGGCGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 2787 0.69 0.187923
Target:  5'- aCGUUGCGCAGguGcGCCcacuucgucgauucGUCgGgCCAGGu -3'
miRNA:   3'- -GCAGCGCGUCguC-CGG--------------CAGgC-GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 31835 0.69 0.199467
Target:  5'- --aUGCGguGCAGGCUG-CgCGCCuGGg -3'
miRNA:   3'- gcaGCGCguCGUCCGGCaG-GCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 10721 0.69 0.204676
Target:  5'- cCG-CGCGCGGCGGGCUG---GUCAGGc -3'
miRNA:   3'- -GCaGCGCGUCGUCCGGCaggCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 27015 0.68 0.232514
Target:  5'- gGUUGCGCGuGCAucGGUCGUCCGgCAu- -3'
miRNA:   3'- gCAGCGCGU-CGU--CCGGCAGGCgGUcc -5'
26538 3' -62.2 NC_005357.1 + 19424 0.67 0.276763
Target:  5'- aGgCGCaGCAGCAGGCCGa---CCAGGc -3'
miRNA:   3'- gCaGCG-CGUCGUCCGGCaggcGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 12291 0.68 0.23845
Target:  5'- cCGaCGCGguGCAGGCCGgCgGCguGu -3'
miRNA:   3'- -GCaGCGCguCGUCCGGCaGgCGguCc -5'
26538 3' -62.2 NC_005357.1 + 13869 0.68 0.232514
Target:  5'- aCGUgCGCGCcGCGauGGCCGgcggCCGCaAGGu -3'
miRNA:   3'- -GCA-GCGCGuCGU--CCGGCa---GGCGgUCC- -5'
26538 3' -62.2 NC_005357.1 + 4381 0.76 0.062135
Target:  5'- --aUGCGCAGCcaGGcGCCGUCgCGCCGGGc -3'
miRNA:   3'- gcaGCGCGUCG--UC-CGGCAG-GCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 30290 0.68 0.244513
Target:  5'- gCGgaaGCGCAGCGcguGGCgCGUCgCGCCAa- -3'
miRNA:   3'- -GCag-CGCGUCGU---CCG-GCAG-GCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 11183 0.74 0.093991
Target:  5'- aCGUCGCccggcucGUAGCuGGGCCG-CgCGCCGGGg -3'
miRNA:   3'- -GCAGCG-------CGUCG-UCCGGCaG-GCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 4414 0.68 0.230757
Target:  5'- aG-CGUGCGGCagucguAGGUCGUacccggccgcaacaCCGCCAGGc -3'
miRNA:   3'- gCaGCGCGUCG------UCCGGCA--------------GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 6466 0.68 0.244513
Target:  5'- cCGUCGCGCAGgAacuGCaCG-CCGCgCAGGc -3'
miRNA:   3'- -GCAGCGCGUCgUc--CG-GCaGGCG-GUCC- -5'
26538 3' -62.2 NC_005357.1 + 5751 0.67 0.297694
Target:  5'- ---aGCGCGcCGGGCagcgaGUgCGCCAGGg -3'
miRNA:   3'- gcagCGCGUcGUCCGg----CAgGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 27179 0.72 0.117293
Target:  5'- -uUUGUGCGGCAGGCCGacccUCUGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUCCGGC----AGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 11439 0.69 0.191372
Target:  5'- gGUCGCGCgugAGCAGaucguccaccgucacGCCGaaguagUCCGCCAGc -3'
miRNA:   3'- gCAGCGCG---UCGUC---------------CGGC------AGGCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.