miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 3' -62.2 NC_005357.1 + 29864 0.66 0.340794
Target:  5'- uCGcCGCGCAGCgcgAGGCCGgCaagaaauucaccgaCGCCgAGGu -3'
miRNA:   3'- -GCaGCGCGUCG---UCCGGCaG--------------GCGG-UCC- -5'
26538 3' -62.2 NC_005357.1 + 21257 0.78 0.043091
Target:  5'- gGcCGCGCAGCAGGCCGcgCUGuugaaCCAGGg -3'
miRNA:   3'- gCaGCGCGUCGUCCGGCa-GGC-----GGUCC- -5'
26538 3' -62.2 NC_005357.1 + 17426 0.66 0.343183
Target:  5'- aCGUCGCccuugaGCAGU-GGCC--CCGCCAGc -3'
miRNA:   3'- -GCAGCG------CGUCGuCCGGcaGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 21989 0.66 0.343183
Target:  5'- -uUCGCGCAGCgugcGGGUuuCGUCggCGCCuGGc -3'
miRNA:   3'- gcAGCGCGUCG----UCCG--GCAG--GCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 5896 0.7 0.166152
Target:  5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3'
miRNA:   3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 29921 0.66 0.335265
Target:  5'- -uUCGCGCAuCAGuGCCGUggcUUGCCAGu -3'
miRNA:   3'- gcAGCGCGUcGUC-CGGCA---GGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 3874 0.66 0.335265
Target:  5'- cCGUCGCu--GUAGGCCGcgCUGCCGu- -3'
miRNA:   3'- -GCAGCGcguCGUCCGGCa-GGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 27703 0.66 0.327482
Target:  5'- cCG-CGCGcCGGCAgcGGCuCG-CCGCCGGu -3'
miRNA:   3'- -GCaGCGC-GUCGU--CCG-GCaGGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 40666 0.69 0.189395
Target:  5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3'
miRNA:   3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5'
26538 3' -62.2 NC_005357.1 + 34688 0.68 0.23845
Target:  5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3'
miRNA:   3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 2232 0.68 0.244513
Target:  5'- --aCGCGCAGCAGGCgG--CGCguGGc -3'
miRNA:   3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5'
26538 3' -62.2 NC_005357.1 + 10478 0.68 0.253216
Target:  5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3'
miRNA:   3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 33673 0.67 0.266088
Target:  5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3'
miRNA:   3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 15386 0.67 0.270051
Target:  5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3'
miRNA:   3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5'
26538 3' -62.2 NC_005357.1 + 18412 0.66 0.304939
Target:  5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3'
miRNA:   3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 42040 0.66 0.312319
Target:  5'- aGUCGCGC-GCuGGCCGcgcucaaUCGgCAGGc -3'
miRNA:   3'- gCAGCGCGuCGuCCGGCa------GGCgGUCC- -5'
26538 3' -62.2 NC_005357.1 + 15584 0.66 0.312319
Target:  5'- aCGaCGCGCuGCGGaugcaccgcGCCaUCgGCCAGGa -3'
miRNA:   3'- -GCaGCGCGuCGUC---------CGGcAGgCGGUCC- -5'
26538 3' -62.2 NC_005357.1 + 2132 0.66 0.319833
Target:  5'- -aUCGUGCAGCA-GCCGgucaaccgcgCCGCCGu- -3'
miRNA:   3'- gcAGCGCGUCGUcCGGCa---------GGCGGUcc -5'
26538 3' -62.2 NC_005357.1 + 26135 0.66 0.319833
Target:  5'- uCGUCgcggcagauuugGCGCAGCGGcucGCCGUCUGCg--- -3'
miRNA:   3'- -GCAG------------CGCGUCGUC---CGGCAGGCGgucc -5'
26538 3' -62.2 NC_005357.1 + 32355 0.66 0.327482
Target:  5'- gGUCGCuGCGGUcgccgccgAGGCCccggCCGCCcagcAGGa -3'
miRNA:   3'- gCAGCG-CGUCG--------UCCGGca--GGCGG----UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.