miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26538 5' -53 NC_005357.1 + 12392 0.66 0.78955
Target:  5'- uGCGAAuacGUGGuguGggGCaCCaAGGGCGCg -3'
miRNA:   3'- gUGCUU---UAUCug-CuaCG-GG-UCCCGCG- -5'
26538 5' -53 NC_005357.1 + 41119 0.66 0.78955
Target:  5'- gGCcuGGUGGcCGucGCCCuGGGCGCg -3'
miRNA:   3'- gUGcuUUAUCuGCuaCGGGuCCCGCG- -5'
26538 5' -53 NC_005357.1 + 27303 0.66 0.779314
Target:  5'- gGCGAAGgcuucccACGAcGCCCAcaGGCGCg -3'
miRNA:   3'- gUGCUUUauc----UGCUaCGGGUc-CCGCG- -5'
26538 5' -53 NC_005357.1 + 7018 0.66 0.779314
Target:  5'- uCGCGuGAUGGGCGuuuGUGCCgccuguugCAGcaGGCGCa -3'
miRNA:   3'- -GUGCuUUAUCUGC---UACGG--------GUC--CCGCG- -5'
26538 5' -53 NC_005357.1 + 41732 0.66 0.779314
Target:  5'- gGCGGuaucuUGGGCG--GCCCGGccGGCGCc -3'
miRNA:   3'- gUGCUuu---AUCUGCuaCGGGUC--CCGCG- -5'
26538 5' -53 NC_005357.1 + 8163 0.66 0.758364
Target:  5'- -uCGAu---GAUGcgGCCCAGgaaGGCGCu -3'
miRNA:   3'- guGCUuuauCUGCuaCGGGUC---CCGCG- -5'
26538 5' -53 NC_005357.1 + 15031 0.66 0.758364
Target:  5'- cCGCGuuGGUGuuGGCGAUGCCCGcguugaugcGGGCa- -3'
miRNA:   3'- -GUGCu-UUAU--CUGCUACGGGU---------CCCGcg -5'
26538 5' -53 NC_005357.1 + 36021 0.66 0.758364
Target:  5'- gACGAGuucGACGAcaucaCCgAGGGCGCc -3'
miRNA:   3'- gUGCUUuauCUGCUac---GGgUCCCGCG- -5'
26538 5' -53 NC_005357.1 + 9728 0.66 0.747676
Target:  5'- -uCGAAGccgcGGGCGAacUGCUCGugguGGGCGCg -3'
miRNA:   3'- guGCUUUa---UCUGCU--ACGGGU----CCCGCG- -5'
26538 5' -53 NC_005357.1 + 14407 0.66 0.747676
Target:  5'- aGCGAAGcUGGGCGucg-CCAGGcGCGCc -3'
miRNA:   3'- gUGCUUU-AUCUGCuacgGGUCC-CGCG- -5'
26538 5' -53 NC_005357.1 + 1600 0.66 0.736862
Target:  5'- aCACGggGUcGAgGGUcgGCCCuucguagucGGGCGUg -3'
miRNA:   3'- -GUGCuuUAuCUgCUA--CGGGu--------CCCGCG- -5'
26538 5' -53 NC_005357.1 + 37728 0.67 0.725935
Target:  5'- cUACGAGGgcGGCGucgGUGCCUuucucaccGGGGCGg -3'
miRNA:   3'- -GUGCUUUauCUGC---UACGGG--------UCCCGCg -5'
26538 5' -53 NC_005357.1 + 29284 0.67 0.71933
Target:  5'- gACGugGUAGGCGAcgaacugcuggcccuUGCCCAGcacuucaaGGCGg -3'
miRNA:   3'- gUGCuuUAUCUGCU---------------ACGGGUC--------CCGCg -5'
26538 5' -53 NC_005357.1 + 22251 0.67 0.703794
Target:  5'- gACGAca-AGGCGAaGCCgCAaGGCGCa -3'
miRNA:   3'- gUGCUuuaUCUGCUaCGG-GUcCCGCG- -5'
26538 5' -53 NC_005357.1 + 18643 0.67 0.692605
Target:  5'- cCACGGAauccaucuucGUAGccGCGGcgcaucgGCCCGGuGGCGCc -3'
miRNA:   3'- -GUGCUU----------UAUC--UGCUa------CGGGUC-CCGCG- -5'
26538 5' -53 NC_005357.1 + 34633 0.67 0.681354
Target:  5'- aGCGAGugGGAC-AUGCCCaucgccucgcAGGGCGa -3'
miRNA:   3'- gUGCUUuaUCUGcUACGGG----------UCCCGCg -5'
26538 5' -53 NC_005357.1 + 25775 0.68 0.635967
Target:  5'- gGCGGcaacGAUGGccGCGAUGCgCGcGGCGCg -3'
miRNA:   3'- gUGCU----UUAUC--UGCUACGgGUcCCGCG- -5'
26538 5' -53 NC_005357.1 + 12114 0.68 0.635967
Target:  5'- aCGCGAAGUAcACGcaaagcgGCUCgcaGGGGCGCu -3'
miRNA:   3'- -GUGCUUUAUcUGCua-----CGGG---UCCCGCG- -5'
26538 5' -53 NC_005357.1 + 15146 0.68 0.624582
Target:  5'- gGCGGc--GGAUGc-GCCCAGGGCGa -3'
miRNA:   3'- gUGCUuuaUCUGCuaCGGGUCCCGCg -5'
26538 5' -53 NC_005357.1 + 13480 0.69 0.613204
Target:  5'- gCAUGAccUGGGCGAUGCCgAccgcgccuuuGGGCGa -3'
miRNA:   3'- -GUGCUuuAUCUGCUACGGgU----------CCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.