miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26540 3' -56.7 NC_005357.1 + 32821 0.66 0.586562
Target:  5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3'
miRNA:   3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 37899 0.66 0.575584
Target:  5'- gCGGCACGaCCGCccagcacgCCACGUCaCGGGc -3'
miRNA:   3'- -GCCGUGCaGGUGua------GGUGCGG-GUUCu -5'
26540 3' -56.7 NC_005357.1 + 9212 0.66 0.575584
Target:  5'- gCGGCGCGgCgCACGUUCugcggcGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGCaG-GUGUAGG------UGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 8053 0.66 0.564652
Target:  5'- -cGC-CGUCCAUGaCgCGCGCCCAGGu -3'
miRNA:   3'- gcCGuGCAGGUGUaG-GUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 11214 0.66 0.564652
Target:  5'- cCGcGCAUGaccgCCACGUucccgcCCACGCCCAc-- -3'
miRNA:   3'- -GC-CGUGCa---GGUGUA------GGUGCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 5010 0.66 0.564652
Target:  5'- uCGGCGCaGUCCGCuUUCAgCGCCgCGAu- -3'
miRNA:   3'- -GCCGUG-CAGGUGuAGGU-GCGG-GUUcu -5'
26540 3' -56.7 NC_005357.1 + 39536 0.66 0.553776
Target:  5'- gGGCGCG-CgGCGUCUGUGCCCAu-- -3'
miRNA:   3'- gCCGUGCaGgUGUAGGUGCGGGUucu -5'
26540 3' -56.7 NC_005357.1 + 23080 0.66 0.553776
Target:  5'- aCGGCAauUCCGCcgCCugGCGCCUguccgAAGAc -3'
miRNA:   3'- -GCCGUgcAGGUGuaGG--UGCGGG-----UUCU- -5'
26540 3' -56.7 NC_005357.1 + 28452 0.66 0.550525
Target:  5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3'
miRNA:   3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 18846 0.67 0.536509
Target:  5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3'
miRNA:   3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 38660 0.67 0.532221
Target:  5'- uCGGCACGaCCGaggCUACGUCCAGc- -3'
miRNA:   3'- -GCCGUGCaGGUguaGGUGCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 28201 0.67 0.521556
Target:  5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3'
miRNA:   3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5'
26540 3' -56.7 NC_005357.1 + 1113 0.67 0.521556
Target:  5'- gCGGCAUGUCgCGCAUCg--GCCCGGu- -3'
miRNA:   3'- -GCCGUGCAG-GUGUAGgugCGGGUUcu -5'
26540 3' -56.7 NC_005357.1 + 21146 0.67 0.521556
Target:  5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3'
miRNA:   3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5'
26540 3' -56.7 NC_005357.1 + 1461 0.67 0.521556
Target:  5'- aCGGCGCgGUCgGCGgccUCCugGCaggCCGGGGu -3'
miRNA:   3'- -GCCGUG-CAGgUGU---AGGugCG---GGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 37002 0.67 0.510974
Target:  5'- --cCACG-CCGcCAUCCGCGCCguGGAg -3'
miRNA:   3'- gccGUGCaGGU-GUAGGUGCGGguUCU- -5'
26540 3' -56.7 NC_005357.1 + 23164 0.67 0.510974
Target:  5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3'
miRNA:   3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5'
26540 3' -56.7 NC_005357.1 + 15539 0.67 0.500484
Target:  5'- -uGCACGgugCCgGCcUCCACGUCCAGGu -3'
miRNA:   3'- gcCGUGCa--GG-UGuAGGUGCGGGUUCu -5'
26540 3' -56.7 NC_005357.1 + 7772 0.67 0.490089
Target:  5'- cCGGCGCGaUCUgcgccgGCGUCCAcccuucgcCGCCCAgcAGGc -3'
miRNA:   3'- -GCCGUGC-AGG------UGUAGGU--------GCGGGU--UCU- -5'
26540 3' -56.7 NC_005357.1 + 28017 0.67 0.479796
Target:  5'- aGGCGCG-CCugG-CgACGCCCAGc- -3'
miRNA:   3'- gCCGUGCaGGugUaGgUGCGGGUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.