miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26542 5' -60.5 NC_005357.1 + 30399 0.71 0.167369
Target:  5'- -cGCugGGCAagaccucGCCGGcCAcgGCCGCGCUGCu -3'
miRNA:   3'- caCG--UCGU-------CGGCCaGU--UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 13856 0.72 0.134913
Target:  5'- cUGcCGGUGGCCGa-CGugCGCGCCGCg -3'
miRNA:   3'- cAC-GUCGUCGGCcaGUugGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 40284 0.74 0.093878
Target:  5'- cGUGUacGGCGGCgCGGUUGACCG-GCUGCu -3'
miRNA:   3'- -CACG--UCGUCG-GCCAGUUGGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 4416 0.76 0.070671
Target:  5'- cGUGCGGCAGUCguaGGUCGuacCCG-GCCGCa -3'
miRNA:   3'- -CACGUCGUCGG---CCAGUu--GGCgCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 30842 0.68 0.25561
Target:  5'- -gGCGGcCAGCCGG-CGGCCcuGgGCgGCa -3'
miRNA:   3'- caCGUC-GUCGGCCaGUUGG--CgCGgCG- -5'
26542 5' -60.5 NC_005357.1 + 33814 0.7 0.20611
Target:  5'- -cGCAGCGGCCGaGaagcgCAACCaGCuuauccagcaccagGCCGCa -3'
miRNA:   3'- caCGUCGUCGGC-Ca----GUUGG-CG--------------CGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9194 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 19544 0.77 0.063025
Target:  5'- -cGCAGCAGUCGuUCAACCGCGCg-- -3'
miRNA:   3'- caCGUCGUCGGCcAGUUGGCGCGgcg -5'
26542 5' -60.5 NC_005357.1 + 21656 0.7 0.202338
Target:  5'- cGUGCAGCcGCgCGaugaGUCGAgCGCGgCGCa -3'
miRNA:   3'- -CACGUCGuCG-GC----CAGUUgGCGCgGCG- -5'
26542 5' -60.5 NC_005357.1 + 16809 0.78 0.054585
Target:  5'- -cGC-GCuGCUGG-CGACCGCGCCGCc -3'
miRNA:   3'- caCGuCGuCGGCCaGUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25593 0.72 0.131244
Target:  5'- cGUGCAuccgaacuauGC-GCCGcGUgAACUGCGCCGCc -3'
miRNA:   3'- -CACGU----------CGuCGGC-CAgUUGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 27583 0.71 0.167822
Target:  5'- cGUGCGGC-GCUGGccgccaacggcaUCGACCugggcgaaggcaGCGCCGCc -3'
miRNA:   3'- -CACGUCGuCGGCC------------AGUUGG------------CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 9050 0.73 0.118784
Target:  5'- -aGCGGUGGCCGuGcCGcgauagccagcggugGCCGUGCCGCg -3'
miRNA:   3'- caCGUCGUCGGC-CaGU---------------UGGCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 26327 0.74 0.10044
Target:  5'- cGUGCAGcCGGUCguGGUCAacaacacgaccaucuACgGCGCCGCg -3'
miRNA:   3'- -CACGUC-GUCGG--CCAGU---------------UGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 16697 0.75 0.088722
Target:  5'- cGUGCuGCcGCCGGUgaggacgaCGACCcCGCCGCg -3'
miRNA:   3'- -CACGuCGuCGGCCA--------GUUGGcGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 10058 0.75 0.081489
Target:  5'- cUGCugGGCGGCCGGggccUCGGCgGCGaCCGCa -3'
miRNA:   3'- cACG--UCGUCGGCC----AGUUGgCGC-GGCG- -5'
26542 5' -60.5 NC_005357.1 + 14590 0.68 0.279948
Target:  5'- -aGCAGCGGCgCGGcCGGCgccaccgcgggcaGCGCgCGCg -3'
miRNA:   3'- caCGUCGUCG-GCCaGUUGg------------CGCG-GCG- -5'
26542 5' -60.5 NC_005357.1 + 18590 0.68 0.25561
Target:  5'- -cGCcuGCcuGCUGGUCAcGCCgGUGCCGCa -3'
miRNA:   3'- caCGu-CGu-CGGCCAGU-UGG-CGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 25486 0.69 0.236677
Target:  5'- -gGCGGCAcGCUGcUgGACgGCGCCGUg -3'
miRNA:   3'- caCGUCGU-CGGCcAgUUGgCGCGGCG- -5'
26542 5' -60.5 NC_005357.1 + 760 0.69 0.216655
Target:  5'- -cGUAGUuguucaccgucuuGCCGGUCAgAUCGgGCCGCu -3'
miRNA:   3'- caCGUCGu------------CGGCCAGU-UGGCgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.