miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26543 3' -53.9 NC_005357.1 + 20615 0.66 0.711178
Target:  5'- aGGCGGCGUcgcagGUcggUgUCGGCCUGCgCu -3'
miRNA:   3'- gUCGUCGCAa----UAa--AgGGUCGGACGgG- -5'
26543 3' -53.9 NC_005357.1 + 42242 0.66 0.704464
Target:  5'- cCGGCAGCGUgacggugCCCAGCgacaccggggcgcauCcGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaaa--GGGUCG---------------GaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 41874 0.66 0.699973
Target:  5'- uGGUcgaGGCGUgGUUUUUCAGCg-GCCCg -3'
miRNA:   3'- gUCG---UCGCAaUAAAGGGUCGgaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 19935 0.66 0.693214
Target:  5'- uGGCgGGCaugaccagCCCAGCCcGCCCu -3'
miRNA:   3'- gUCG-UCGcaauaaa-GGGUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 28404 0.66 0.688696
Target:  5'- cCGGCGGCGcggcg-CCaguagauGCCUGUCCa -3'
miRNA:   3'- -GUCGUCGCaauaaaGGgu-----CGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 19054 0.66 0.688696
Target:  5'- cCGGCGGCGUcga---UCAGCgUGUCCu -3'
miRNA:   3'- -GUCGUCGCAauaaagGGUCGgACGGG- -5'
26543 3' -53.9 NC_005357.1 + 895 0.66 0.67736
Target:  5'- cCAGCauGGUGggGUUcaUCCCGGCCgcgGCa- -3'
miRNA:   3'- -GUCG--UCGCaaUAA--AGGGUCGGa--CGgg -5'
26543 3' -53.9 NC_005357.1 + 1268 0.66 0.67736
Target:  5'- cCGGCgAGCGccgGUaUUCCCGGCCcucGaCCCa -3'
miRNA:   3'- -GUCG-UCGCaa-UA-AAGGGUCGGa--C-GGG- -5'
26543 3' -53.9 NC_005357.1 + 17091 0.66 0.665978
Target:  5'- cCGGC-GCGg---UUCUCGGCCggGCCUu -3'
miRNA:   3'- -GUCGuCGCaauaAAGGGUCGGa-CGGG- -5'
26543 3' -53.9 NC_005357.1 + 35364 0.66 0.665978
Target:  5'- -cGCGGCGUcAUgaaguaCCUGGCC-GCCCc -3'
miRNA:   3'- guCGUCGCAaUAaa----GGGUCGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 22706 0.66 0.654561
Target:  5'- aAGCAGCaGUUugcgCUCGGUUUGCUCg -3'
miRNA:   3'- gUCGUCG-CAAuaaaGGGUCGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 32200 0.66 0.654561
Target:  5'- -cGCGGgGgauguUUUCUCGcGCCUGUCCg -3'
miRNA:   3'- guCGUCgCaau--AAAGGGU-CGGACGGG- -5'
26543 3' -53.9 NC_005357.1 + 8215 0.67 0.643122
Target:  5'- uGGCGGCcaGUUcgUgCgCGGCCgUGCCCu -3'
miRNA:   3'- gUCGUCG--CAAuaAaGgGUCGG-ACGGG- -5'
26543 3' -53.9 NC_005357.1 + 27328 0.67 0.631673
Target:  5'- aGGCGcGCGUUGcUUUCCacguaGGCCggGCCg -3'
miRNA:   3'- gUCGU-CGCAAU-AAAGGg----UCGGa-CGGg -5'
26543 3' -53.9 NC_005357.1 + 10166 0.67 0.620223
Target:  5'- uCAGCAGCcagUGUUuugcuugaucgUCCCAcgucaagcgcacGCCgGCCCg -3'
miRNA:   3'- -GUCGUCGca-AUAA-----------AGGGU------------CGGaCGGG- -5'
26543 3' -53.9 NC_005357.1 + 41409 0.67 0.608785
Target:  5'- uCAGCauGGCcgagUAUUUCCCGGCCagugGCgCg -3'
miRNA:   3'- -GUCG--UCGca--AUAAAGGGUCGGa---CGgG- -5'
26543 3' -53.9 NC_005357.1 + 4296 0.68 0.581442
Target:  5'- uCGGCGGUGaacugcaCCAGCUUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaaagGGUCGGACGGg -5'
26543 3' -53.9 NC_005357.1 + 14674 0.68 0.57238
Target:  5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3'
miRNA:   3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5'
26543 3' -53.9 NC_005357.1 + 26527 0.68 0.570119
Target:  5'- gCAGCAGCGgcaagcugCUgGGCCUcaccuacguGCCCg -3'
miRNA:   3'- -GUCGUCGCaauaaa--GGgUCGGA---------CGGG- -5'
26543 3' -53.9 NC_005357.1 + 39254 0.68 0.55212
Target:  5'- -cGCAGCGgacg--CCgGGCUUGCCa -3'
miRNA:   3'- guCGUCGCaauaaaGGgUCGGACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.