miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26549 5' -60.2 NC_005357.1 + 42028 0.69 0.262836
Target:  5'- aCCGcCGUGCUGcugguggGCGCCCUGG-GCAu -3'
miRNA:   3'- gGGCuGCGCGAC-------UGCGGGACUgCGUc -5'
26549 5' -60.2 NC_005357.1 + 42020 0.68 0.328218
Target:  5'- cCCgCGACGUGCUGcucaacagucGCGCgCUGGcCGCGc -3'
miRNA:   3'- -GG-GCUGCGCGAC----------UGCGgGACU-GCGUc -5'
26549 5' -60.2 NC_005357.1 + 39585 0.66 0.413049
Target:  5'- cCUCGcugGUGCUGGCGCCgCUG-CGCGu -3'
miRNA:   3'- -GGGCug-CGCGACUGCGG-GACuGCGUc -5'
26549 5' -60.2 NC_005357.1 + 38920 0.68 0.312877
Target:  5'- cUCCGGguucuCGCGCUG-CGCUCUGGuacaGCGGg -3'
miRNA:   3'- -GGGCU-----GCGCGACuGCGGGACUg---CGUC- -5'
26549 5' -60.2 NC_005357.1 + 38043 0.71 0.198905
Target:  5'- gCCCGGCGCGaC-GGCGCCUggcuGCGCAu -3'
miRNA:   3'- -GGGCUGCGC-GaCUGCGGGac--UGCGUc -5'
26549 5' -60.2 NC_005357.1 + 37982 0.68 0.29736
Target:  5'- -aUGACGgugccacCGCUGGCGgcuuccCCCUGGCGCGGc -3'
miRNA:   3'- ggGCUGC-------GCGACUGC------GGGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 37759 0.68 0.320479
Target:  5'- aUCCGGCGCGCUGGUGCCC--GC-CAa -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGacUGcGUc -5'
26549 5' -60.2 NC_005357.1 + 37633 0.66 0.43157
Target:  5'- uCCCGcaGCGCcaGCcGGCGUgCUgGGCGCAGu -3'
miRNA:   3'- -GGGC--UGCG--CGaCUGCGgGA-CUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 37043 0.67 0.377522
Target:  5'- uCgCGGCGCGCaccagUGACauaaCCCUGgGCGCGGu -3'
miRNA:   3'- -GgGCUGCGCG-----ACUGc---GGGAC-UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 36691 0.69 0.256978
Target:  5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5'
26549 5' -60.2 NC_005357.1 + 36625 0.68 0.304673
Target:  5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3'
miRNA:   3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 36194 0.69 0.270141
Target:  5'- aCCGGCGUGC--AgGCCCUGgccgaaggcaaaACGCAGa -3'
miRNA:   3'- gGGCUGCGCGacUgCGGGAC------------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 35869 0.7 0.22063
Target:  5'- uCCUcaagGAUGCGCUGACGC-CUGGCGauuCGGg -3'
miRNA:   3'- -GGG----CUGCGCGACUGCGgGACUGC---GUC- -5'
26549 5' -60.2 NC_005357.1 + 35860 0.67 0.368967
Target:  5'- gCCGAgGCGgaUGGCaaGCCCU-ACGCGGg -3'
miRNA:   3'- gGGCUgCGCg-ACUG--CGGGAcUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 34496 0.69 0.283841
Target:  5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3'
miRNA:   3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5'
26549 5' -60.2 NC_005357.1 + 33854 0.67 0.377522
Target:  5'- gCCGcACGCGCggccuacGACGCCCaGgaugaggucgaGCGCGGc -3'
miRNA:   3'- gGGC-UGCGCGa------CUGCGGGaC-----------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 32096 0.66 0.395028
Target:  5'- -aCGGcCGCGUUGcucaACGCCCUGGcCGCu- -3'
miRNA:   3'- ggGCU-GCGCGAC----UGCGGGACU-GCGuc -5'
26549 5' -60.2 NC_005357.1 + 32044 0.66 0.421323
Target:  5'- aCCCGGCGCGCUcgcacaacuaugcGACGCC---AUGCu- -3'
miRNA:   3'- -GGGCUGCGCGA-------------CUGCGGgacUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 31741 0.71 0.183856
Target:  5'- gCCGuGCGCGCUGcCGUCaaGACGCAa -3'
miRNA:   3'- gGGC-UGCGCGACuGCGGgaCUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 30881 0.68 0.320479
Target:  5'- aCCGGCGgGCaguccuaucagGAUGCCCgcuCGCAGg -3'
miRNA:   3'- gGGCUGCgCGa----------CUGCGGGacuGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.