miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26578 3' -54.9 NC_005357.1 + 17989 0.66 0.69117
Target:  5'- uGUCGCCGagGCCGCgcgCGgcaCCgACAAaucgGGCc -3'
miRNA:   3'- -CAGCGGC--UGGUGa--GCa--GGgUGUU----UCG- -5'
26578 3' -54.9 NC_005357.1 + 40562 0.66 0.69117
Target:  5'- -gCGCCGGCCACgggCugaaCCUGCAAgacGGCg -3'
miRNA:   3'- caGCGGCUGGUGa--Gca--GGGUGUU---UCG- -5'
26578 3' -54.9 NC_005357.1 + 8396 0.66 0.680096
Target:  5'- aUCGCCGcCCACgUGUCggGCAgcGAGCa -3'
miRNA:   3'- cAGCGGCuGGUGaGCAGggUGU--UUCG- -5'
26578 3' -54.9 NC_005357.1 + 25046 0.66 0.680096
Target:  5'- uGUCGCgCGAuCCGC-CGUUaCCAUcgGGCa -3'
miRNA:   3'- -CAGCG-GCU-GGUGaGCAG-GGUGuuUCG- -5'
26578 3' -54.9 NC_005357.1 + 8420 0.66 0.680096
Target:  5'- --gGCCGugCGCUUGUCuacggCCuuGAGGCu -3'
miRNA:   3'- cagCGGCugGUGAGCAG-----GGugUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 9433 0.66 0.678986
Target:  5'- uGUCGCUGGgCACUuccagcaCGUaCCACuuGGCg -3'
miRNA:   3'- -CAGCGGCUgGUGA-------GCAgGGUGuuUCG- -5'
26578 3' -54.9 NC_005357.1 + 40976 0.66 0.678986
Target:  5'- -cCGCCGACCGCgcCGUCaagaagguguuugCCAUcuuGGGCg -3'
miRNA:   3'- caGCGGCUGGUGa-GCAG-------------GGUGu--UUCG- -5'
26578 3' -54.9 NC_005357.1 + 30095 0.66 0.668975
Target:  5'- -gCGCCacGGCC-CUUGUCCCA---GGCg -3'
miRNA:   3'- caGCGG--CUGGuGAGCAGGGUguuUCG- -5'
26578 3' -54.9 NC_005357.1 + 29246 0.66 0.668975
Target:  5'- -aCGCCGGCCAagggCG-CCCAgCGcGGCc -3'
miRNA:   3'- caGCGGCUGGUga--GCaGGGU-GUuUCG- -5'
26578 3' -54.9 NC_005357.1 + 39778 0.66 0.646637
Target:  5'- --gGgCGACCGCUgGcccUUCCGCAAAGUg -3'
miRNA:   3'- cagCgGCUGGUGAgC---AGGGUGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 4388 0.66 0.646637
Target:  5'- --gGCCGACUugUCGgCCUugAugaAAGCc -3'
miRNA:   3'- cagCGGCUGGugAGCaGGGugU---UUCG- -5'
26578 3' -54.9 NC_005357.1 + 13545 0.66 0.646637
Target:  5'- uGUCgGCCG-CCugACUCGgugCCCAC--GGCg -3'
miRNA:   3'- -CAG-CGGCuGG--UGAGCa--GGGUGuuUCG- -5'
26578 3' -54.9 NC_005357.1 + 20366 0.67 0.635442
Target:  5'- -gCGCCGACCGCga--CCCGagcAAGCg -3'
miRNA:   3'- caGCGGCUGGUGagcaGGGUgu-UUCG- -5'
26578 3' -54.9 NC_005357.1 + 30412 0.67 0.635442
Target:  5'- cUCGCCGGCCACgg--CCgCGCugcuGGCc -3'
miRNA:   3'- cAGCGGCUGGUGagcaGG-GUGuu--UCG- -5'
26578 3' -54.9 NC_005357.1 + 17136 0.67 0.635442
Target:  5'- --gGCCGGCCGCaCGaCCU-CAAGGCa -3'
miRNA:   3'- cagCGGCUGGUGaGCaGGGuGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 19642 0.67 0.635442
Target:  5'- -aUGCUGACCGg----CCCGCAGGGCg -3'
miRNA:   3'- caGCGGCUGGUgagcaGGGUGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 4568 0.67 0.624243
Target:  5'- aGUCGCCGaggcGCUGCUCGgUgCGCcAGGCg -3'
miRNA:   3'- -CAGCGGC----UGGUGAGCaGgGUGuUUCG- -5'
26578 3' -54.9 NC_005357.1 + 23721 0.67 0.613052
Target:  5'- gGUCGCgGGCCAgugcCUCGguggCgCGCAGcAGCg -3'
miRNA:   3'- -CAGCGgCUGGU----GAGCa---GgGUGUU-UCG- -5'
26578 3' -54.9 NC_005357.1 + 21145 0.67 0.60858
Target:  5'- -aCGCCGACCGCUgGgccgacacuuacgCCgACAugcuGGGCa -3'
miRNA:   3'- caGCGGCUGGUGAgCa------------GGgUGU----UUCG- -5'
26578 3' -54.9 NC_005357.1 + 40833 0.67 0.601878
Target:  5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3'
miRNA:   3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.