miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26578 3' -54.9 NC_005357.1 + 40976 0.66 0.678986
Target:  5'- -cCGCCGACCGCgcCGUCaagaagguguuugCCAUcuuGGGCg -3'
miRNA:   3'- caGCGGCUGGUGa-GCAG-------------GGUGu--UUCG- -5'
26578 3' -54.9 NC_005357.1 + 40833 0.67 0.601878
Target:  5'- --gGCCGACC-CUCGaCCC-CGuguGGCa -3'
miRNA:   3'- cagCGGCUGGuGAGCaGGGuGUu--UCG- -5'
26578 3' -54.9 NC_005357.1 + 40721 0.7 0.432139
Target:  5'- cUCGCCGGCaCGC-CGgCCCAC--GGCg -3'
miRNA:   3'- cAGCGGCUG-GUGaGCaGGGUGuuUCG- -5'
26578 3' -54.9 NC_005357.1 + 40562 0.66 0.69117
Target:  5'- -gCGCCGGCCACgggCugaaCCUGCAAgacGGCg -3'
miRNA:   3'- caGCGGCUGGUGa--Gca--GGGUGUU---UCG- -5'
26578 3' -54.9 NC_005357.1 + 39778 0.66 0.646637
Target:  5'- --gGgCGACCGCUgGcccUUCCGCAAAGUg -3'
miRNA:   3'- cagCgGCUGGUGAgC---AGGGUGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 38506 0.67 0.57962
Target:  5'- aUCGCgGACgGCagcgCGUCCC-CGAAGa -3'
miRNA:   3'- cAGCGgCUGgUGa---GCAGGGuGUUUCg -5'
26578 3' -54.9 NC_005357.1 + 38388 0.7 0.422422
Target:  5'- -cCGcCCGGCUgcGCUCGaCCCGCGcGGCa -3'
miRNA:   3'- caGC-GGCUGG--UGAGCaGGGUGUuUCG- -5'
26578 3' -54.9 NC_005357.1 + 38122 0.67 0.57962
Target:  5'- -aCGCCGGCaaGCU-GUCCUACAuGGGCg -3'
miRNA:   3'- caGCGGCUGg-UGAgCAGGGUGU-UUCG- -5'
26578 3' -54.9 NC_005357.1 + 37735 0.67 0.601878
Target:  5'- cUUGCCGGCCAUUC-UCgCCGCGcuauccGGCg -3'
miRNA:   3'- cAGCGGCUGGUGAGcAG-GGUGUu-----UCG- -5'
26578 3' -54.9 NC_005357.1 + 37617 0.73 0.279025
Target:  5'- uGUCGCCGGCCAgcaaUCCCGCAgcGCc -3'
miRNA:   3'- -CAGCGGCUGGUgagcAGGGUGUuuCG- -5'
26578 3' -54.9 NC_005357.1 + 37537 0.67 0.601878
Target:  5'- cGUgGCCGaaaacgagGCCGC-CGUCgCCGCGcuGGGCa -3'
miRNA:   3'- -CAgCGGC--------UGGUGaGCAG-GGUGU--UUCG- -5'
26578 3' -54.9 NC_005357.1 + 37524 0.71 0.375878
Target:  5'- cGUCGCCGACCugUCGaa-CAuCGAAGg -3'
miRNA:   3'- -CAGCGGCUGGugAGCaggGU-GUUUCg -5'
26578 3' -54.9 NC_005357.1 + 35600 0.7 0.44596
Target:  5'- cGUCGCCGAgggcaacgacgaaacCCGCgccgUGUCCCugGcugaccAGGCg -3'
miRNA:   3'- -CAGCGGCU---------------GGUGa---GCAGGGugU------UUCG- -5'
26578 3' -54.9 NC_005357.1 + 34214 0.68 0.54659
Target:  5'- -cCGCCGACCAg-CGcgaCUACGAGGCc -3'
miRNA:   3'- caGCGGCUGGUgaGCag-GGUGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 33848 0.69 0.49722
Target:  5'- gGUCGCCGugaccgucgugucgcGCCugUCGcugCCCGCcaucGGCg -3'
miRNA:   3'- -CAGCGGC---------------UGGugAGCa--GGGUGuu--UCG- -5'
26578 3' -54.9 NC_005357.1 + 32637 0.71 0.366994
Target:  5'- gGUCGCUGuCCugUCGaaguucggCgCCGCGAAGCu -3'
miRNA:   3'- -CAGCGGCuGGugAGCa-------G-GGUGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 31567 0.67 0.57962
Target:  5'- -gCGCCGACCGaa-G-CCaCGCAGGGCc -3'
miRNA:   3'- caGCGGCUGGUgagCaGG-GUGUUUCG- -5'
26578 3' -54.9 NC_005357.1 + 30412 0.67 0.635442
Target:  5'- cUCGCCGGCCACgg--CCgCGCugcuGGCc -3'
miRNA:   3'- cAGCGGCUGGUGagcaGG-GUGuu--UCG- -5'
26578 3' -54.9 NC_005357.1 + 30205 0.69 0.472263
Target:  5'- uGUUGCCgGugUGCUgCGUCCCGaccaGGGGCa -3'
miRNA:   3'- -CAGCGG-CugGUGA-GCAGGGUg---UUUCG- -5'
26578 3' -54.9 NC_005357.1 + 30095 0.66 0.668975
Target:  5'- -gCGCCacGGCC-CUUGUCCCA---GGCg -3'
miRNA:   3'- caGCGG--CUGGuGAGCAGGGUguuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.